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Recent Activity
All posts created by debbie
| Link to this post | posted 26 Sep, 2020 19:37 | |
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Hi Michael and all, Phamerator is undergoing a rather big update this weekend. It will take a bit of time for the remaining databases to catch up. This forum explains. https://seaphages.org/forums/topic/254/ debbie |
Posted in: Starterator → Pham 36129 report not found in Starterator
| Link to this post | posted 24 Sep, 2020 11:46 | |
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Hi Steve, This is likely due to the wild fires in California. It appears that folks can be back on campus, but if the Lowe lab can't get to their servers, tRNA-ScanSE is in jeopardy. debbie |
Posted in: tRNAs → tRNAScan-SE Down-ish?
| Link to this post | posted 20 Sep, 2020 19:16 | |
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We have more experimental data for -1 frameshifts. So we will call the -1 until we can do an experiment to differentiate. debbie |
Posted in: Frameshifts and Introns → Frameshift K6
| Link to this post | posted 11 Sep, 2020 20:53 | |
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Hi all, I think the fix is easy. I believe - if you are clicking on DNA Master.exe –you are clicking on the DNA Master installation program. That is not the one that you want. Go to C: -> Program files -> DNA Master folder and look for the DNAMas.exe file which will run DNA Master. Be sure to check that you are running as administrator. Let me know, debbie |
Posted in: DNA Master → DNA Master Application Corrupted
| Link to this post | posted 09 Sep, 2020 01:45 | |
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Steve, Check the build, I think that he has not updated DNA Master. debbie |
Posted in: DNA Master → Novel Student Issue
| Link to this post | posted 08 Sep, 2020 19:52 | |
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Jasmin, HI. There are 2 common errors that can cause this. One is that our permission to use the Glimmer server ran out and needs to be updated. I have ruled that out because I was able to auto-annotate and obtain Glimmer results. The second reason is usually that the settings are incorrect in Preferences. Have them check # 2 at this page of the guide. The unlock code is Hatfull; there is no password. https://seaphagesbioinformatics.helpdocsonline.com/article-66 |
Posted in: DNA Master → Glimmer Failure on Auto Annotation
| Link to this post | posted 05 Sep, 2020 13:16 | |
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An update to DNA Master has been posted. Blast will not work unless you update. The latest version is Version 5.23.3 Build 2657 4Sep2020 |
Posted in: DNA Master → Blast error
| Link to this post | posted 04 Sep, 2020 19:46 | |
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Kyle, It is up to GenBank. They promise an accession number in 3 days when a genome is submitted. Then they have to process it. That time is unpredictable. My last submissions took ~ month. debbie |
Posted in: Annotation → In Genbank
| Link to this post | posted 04 Sep, 2020 14:15 | |
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No worries. Par for the course. |
Posted in: DNA Master → Blast error
| Link to this post | posted 04 Sep, 2020 13:28 | |
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Hi all, Sorry about the timing. In talking with Dr. Lawrence, we think this is an NCBI change. I have written emails to any/all folks I can think of at NCBI who may be able to answer or direct me to who could answer the question. NLM Help Desk replied with a 2-5 response timeline. I'll keep you posted. debbie |
Posted in: DNA Master → Blast error