Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.
Recent Activity
adiaz posted in Tail Assembly Chaperone in KaiHaiDragon
Welkin Pope posted in Tail Assembly Chaperone in KaiHaiDragon
adiaz posted in Tail Assembly Chaperone in KaiHaiDragon
cdshaffer posted in fushigi_draft 52 homing endonuclease + primase
Welkin Pope posted in fushigi_draft 52 homing endonuclease + primase
SEA-PHAGES Community
| Forums | Topics | Posts | Last post |
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General Message Board
A place to post messages of interest to the SEA-PHAGES community, such as undergraduate research opportunities, job postings, paper announcements, etc.
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9 | 18 |
Feb 27, 2018 11:55 AM |
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Host-Range Project
A forum for discussions and questions about the SEA-PHAGES community project investigating the host range of a known panel of phages.
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5 | 29 |
Feb 20, 2018 2:32 PM |
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Xeno Project
A forum for discussions and questions about the SEA-PHAGES community project seeking phages that are defended against by a Xeno lysogen.
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4 | 8 |
Jun 7, 2017 6:37 PM |
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Messages for Cabrini College
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1 | 25 |
May 31, 2016 11:44 AM |
Science
| Forums | Topics | Posts | Last post |
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Phage Biology
No question is too simple or too complicated! Ask questions about phages here.
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5 | 10 |
Feb 27, 2018 4:35 PM |
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Annotation
Questions about calling genes/tRNAs, selecting start sites, predicting functions, etc.
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147 | 482 |
Jun 18, 2018 11:17 AM |
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Cluster-Specific Annotation Tips
This forum contains sub-forums that have specific and critical information you'll need to know when annotating phages of certain clusters.
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148 | 173 |
Jun 19, 2018 10:30 AM |
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Lysogeny/Immunity
Questions and discussions about temperate phages, the lysogenic life cycle, genetic switches, immunity, repressors, super-infection, etc.
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3 | 9 |
Apr 11, 2017 7:32 PM |
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Papers
Questions about or suggestions of interesting papers related to phages.
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3 | 10 |
Dec 12, 2017 9:04 AM |
Protocols
| Forums | Topics | Posts | Last post |
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Phage Discovery/Isolation
Questions about how to isolate phages from the environment, including the use of enrichment protocols to help yield.
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11 | 77 |
Dec 11, 2017 9:27 AM |
Software
| Forums | Topics | Posts | Last post |
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DNA Master
Using DNA Master to annotate and analyze phage genomes.
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53 | 389 |
Jun 15, 2018 11:53 AM |
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Phamerator
Questions, discussions, and help related to using the comparative-genomics program Phamerator.
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23 | 120 |
Feb 14, 2018 8:28 AM |
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SEA-PHAGES Virtual Machine
Questions related to downloading, installing, and using the SEA-PHAGES Virtual Machine.
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13 | 84 |
Jan 22, 2018 3:08 PM |
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SEA-PHAGES App
Questions/comments/discussions related to using the SEA-PHAGES App, available on iOS and Android.
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1 | 8 |
Dec 7, 2017 11:32 AM |
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PECAAN
A forum for questions about the Phage Evidence Collection and Annotation Network developed at Western Kentucky University.
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10 | 30 |
Jun 13, 2018 3:33 PM |
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Consed
Questions and discussions about how to use Consed to quality-control phage genome assemblies.
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2 | 8 |
Apr 6, 2016 11:38 PM |
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Newbler
Using 454's GS De Novo Assembler (aka Newbler) to assemble phage genomes.
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0 | 0 | |
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Starterator
Using Starterator to compare called gene start sites across a pham, and interpreting results.
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21 | 201 |
May 26, 2018 5:51 PM |
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AceUtil
Questions about using AceUtil to quality-control phage genomes.
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0 | 0 |
Hosts
| Forums | Topics | Posts | Last post |
|---|---|---|---|
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Arthrobacter
Questions/comments related to using Arthrobacter species as phage hunting hosts.
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4 | 11 |
Jun 12, 2018 2:54 PM |
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Gordonia
Questions/comments related to using Gordonia species as phage hunting hosts.
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1 | 1 |
Aug 25, 2016 4:56 PM |
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Microbacterium
Questions/comments related to using Microbacterium species as phage hunting hosts.
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1 | 3 |
Oct 17, 2017 10:18 AM |
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Mycobacterium
Questions/comments related to using Mycobacterium species as phage hunting hosts.
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3 | 14 |
Feb 7, 2018 8:40 PM |
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Rhodococcus
Questions/comments related to using Rhodococcus species as phage hunting hosts.
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0 | 0 | |
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Streptomyces
Questions/comments related to using Streptomyces species as phage hunting hosts.
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2 | 14 |
Jul 11, 2017 1:08 PM |