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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
12 41 Apr 13, 2018
10:40 AM
Choosing Start Sites
Questions about tricky-to-call start sites.
7 33 Feb 20, 2019
12:05 PM
tRNAs
Questions about properly searching for and calling tRNAs.
8 27 Feb 25, 2019
6:27 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
66 218 Mar 21, 2019
11:47 AM
Request a new function on the SEA-PHAGES official list
40 110 Mar 19, 2019
10:46 AM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
12 37 Jul 17, 2018
12:22 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
Is pham 23434 a DNA recombinase or a helicase?
2 20 Mar 22, 2019
5:49 PM
BLAST score algorithm
1 5 Mar 21, 2019
11:25 AM
Different coding potential for same sequence?
9 42 Mar 15, 2019
6:06 AM
Membrane protein
7 65 Mar 14, 2019
10:54 PM
Annotations of Microbacterium foliorum
4 53 Mar 14, 2019
9:57 AM
Pham 5614 function
2 23 Mar 12, 2019
2:02 PM
Using PECAAN in class pages: 1 2 3
25 354 Mar 11, 2019
8:16 PM
Lysin A and Holin in BI1 cluster Streptomyces phage
5 30 Mar 1, 2019
5:15 PM
Starterator not matching up with listed phams
4 33 Feb 26, 2019
5:02 PM
GeneMark and G rubripertincta
1 4 Feb 25, 2019
5:58 PM
Phage hits not showing in NCBI but 100% to Gordonia ...
4 26 Feb 5, 2019
3:00 PM
Cluster N HicA-like toxin/antitoxin functional assignment
1 5 Jan 2, 2019
3:53 PM
Authors file
4 29 Dec 17, 2018
11:39 AM
Putative Frameshift in a Reverse gene in N-Cluster Phage BabeRuth
2 24 Nov 19, 2018
12:51 PM
Head-tail connectors
8 118 Jul 25, 2018
12:37 PM
tRNA in EA2 and EA5 phages called by tRNAscan SE ...
2 23 Jul 22, 2018
6:54 AM
New Frameshift in K5 bacteriophage RtcB-ligase ?
3 22 Jul 17, 2018
4:42 PM
Cluster K5 terminases
3 14 Jul 17, 2018
12:32 PM
Annotating the CR3 Frameshift
1 13 Jul 8, 2018
7:34 PM
New frameshift in an A1 phage?
7 49 Jun 26, 2018
5:14 PM

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