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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
12 41 Apr 13, 2018
10:40 AM
Choosing Start Sites
Questions about tricky-to-call start sites.
6 26 Jun 22, 2018
7:08 AM
tRNAs
Questions about properly searching for and calling tRNAs.
7 24 Jul 1, 2018
10:53 AM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
62 196 Jan 16, 2019
1:46 PM
Request a new function on the SEA-PHAGES official list
38 101 Dec 12, 2018
3:54 PM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
12 37 Jul 17, 2018
12:22 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
Membrane protein
1 9 Jan 18, 2019
2:35 PM
Cluster N HicA-like toxin/antitoxin functional assignment
1 5 Jan 2, 2019
3:53 PM
Authors file
4 29 Dec 17, 2018
11:39 AM
Putative Frameshift in a Reverse gene in N-Cluster Phage BabeRuth
2 23 Nov 19, 2018
12:51 PM
Head-tail connectors
8 112 Jul 25, 2018
12:37 PM
tRNA in EA2 and EA5 phages called by tRNAscan SE ...
2 22 Jul 22, 2018
6:54 AM
New Frameshift in K5 bacteriophage RtcB-ligase ?
3 22 Jul 17, 2018
4:42 PM
Cluster K5 terminases
3 14 Jul 17, 2018
12:32 PM
Annotating the CR3 Frameshift
1 12 Jul 8, 2018
7:34 PM
New frameshift in an A1 phage?
7 45 Jun 26, 2018
5:14 PM
one protein with DNA binding and membrane domains
3 15 Jun 2, 2018
11:20 AM
Nicotinamide riboside transporter
4 30 May 30, 2018
2:05 PM
Submission error
2 19 May 30, 2018
1:26 PM
Membrane protein in DE phage
2 19 May 30, 2018
1:23 PM
Minor tail protein in DC cluster
1 9 May 29, 2018
3:54 PM
Minor Tail Protein (Pham 21676) in EA Phages?
3 24 May 8, 2018
10:44 AM
Annotation check questions
2 32 May 3, 2018
4:05 PM
Annotation advise: Frameshift in EA1
5 67 Apr 26, 2018
10:28 PM
Pham Number Discrepancy
4 20 Apr 26, 2018
2:03 PM
Pham 37120
3 16 Apr 26, 2018
12:04 PM

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