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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
31 112 Apr 27, 2023
11:43 AM
Choosing Start Sites
Questions about tricky-to-call start sites.
15 62 Feb 26, 2023
2:10 PM
tRNAs
Questions about properly searching for and calling tRNAs.
23 97 May 4, 2023
7:11 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
139 505 May 12, 2023
8:14 PM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
24 106 Apr 12, 2023
8:59 PM
Request a new function on the SEA-PHAGES official list
50 173 Mar 29, 2023
8:44 AM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
23 96 May 22, 2022
6:03 PM
How to Pass Preliminary Annotation Review
2 6 May 1, 2023
9:14 AM
Topics Posts Views Last post
capsid maturation protease or hypothetical protein (MuF-like minor capsid protein)
3 25 May 18, 2023
12:37 PM
5’nucleotidase v. phosphatase
5 23 Apr 19, 2023
7:55 PM
helix-turn-helix binding domain or protein? pages: 1 2
12 121 Apr 12, 2023
4:56 PM
Membrane proteins pages: 1 2
12 123 Apr 10, 2023
8:15 AM
SSB protein or RecT-like pairing protein
2 11 Apr 3, 2023
8:54 AM
head-to-tail stopper
2 26 Mar 29, 2023
8:54 AM
Kikiko_42
3 20 Mar 28, 2023
4:04 PM
secreted protein?
2 7 Mar 16, 2023
7:42 PM
Serine hydrolase?
2 9 Mar 15, 2023
10:01 PM
2022 Genomics Workshop Follow-up Annotation: Ciao pages: 1 2
13 115 Jan 17, 2023
9:11 AM
TAC in FM cluster
6 27 Apr 10, 2022
3:29 PM
Called an orpham but isn't?
5 15 Apr 6, 2022
2:28 PM
Capsid genes
1 8 Apr 6, 2022
1:49 PM
duplicated genes at start/end of genome
6 23 Apr 6, 2022
12:44 PM
In Genbank
9 59 Feb 18, 2022
12:30 PM
New function? Hfq RNA binding protein
7 52 Feb 15, 2022
1:22 PM
Phosphoribosyl transferase new function: Phelipe_64 and Bosnia_40
1 9 Feb 4, 2022
3:16 PM
Is this a sequencing error?
3 19 Jul 15, 2021
10:32 AM
Mid-gene deletion causing frameshift and orphams
6 235 Jun 3, 2021
10:19 AM
List of bioinformatic software
2 472 May 18, 2021
1:13 PM

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