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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

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Forums Topics Posts Last post
SMART Function Investigations
As SMART proceeds through their functional assignment investigations, they will share how and what they find, and post it here. Use these investigations to develop your investigations in your classrooms for deeper understanding of phage biology.
2 3 Mar 28, 2024
11:58 AM
Choosing Start Sites
Questions about tricky-to-call start sites.
15 67 Feb 21, 2024
7:44 AM
tRNAs
Questions about properly searching for and calling tRNAs.
25 100 Feb 13, 2024
11:17 AM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
148 539 Mar 15, 2024
2:18 PM
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
35 130 May 8, 2024
10:16 PM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
25 109 Feb 28, 2024
10:14 AM
Request a new function on the SEA-PHAGES official list
52 180 May 11, 2024
10:01 AM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
23 96 May 22, 2022
6:03 PM
How to Pass Preliminary Annotation Review
2 6 May 1, 2023
9:14 AM
HHpred
Questions about how to use or interpret results from HHpred.
0 0
Topics Posts Views Last post
capsid maturation protease or hypothetical protein (MuF-like minor capsid protein)
10 67 May 16, 2024
3:58 PM
RecA-like recombinase or UvsX-like recombinase for KentuckyRacer 62351-62378
2 24 Feb 16, 2024
1:37 PM
2 genes in same place of Cluster BE phage, Kentucky …
2 28 Feb 15, 2024
5:34 PM
Gap or overlap in Superstar (BD2)
10 44 Feb 7, 2024
10:25 PM
helix-turn-helix binding domain or protein? pages: 1 2
13 205 Feb 7, 2024
4:17 PM
Membrane proteins pages: 1 2
20 239 Feb 6, 2024
10:03 PM
Glitch in phagesDB GeneMark? Reverse frames being flipped!
3 19 Jan 30, 2024
2:31 PM
Calling an ADP riboosyltransferase in DZ phage Morgana
3 25 Jun 28, 2023
4:17 PM
5’nucleotidase v. phosphatase
5 23 Apr 19, 2023
7:55 PM
SSB protein or RecT-like pairing protein
2 20 Apr 3, 2023
8:54 AM
head-to-tail stopper
2 30 Mar 29, 2023
8:54 AM
Kikiko_42
3 24 Mar 28, 2023
4:04 PM
secreted protein?
2 7 Mar 16, 2023
7:42 PM
2022 Genomics Workshop Follow-up Annotation: Ciao pages: 1 2
13 121 Jan 17, 2023
9:11 AM
TAC in FM cluster
6 31 Apr 10, 2022
3:29 PM
Called an orpham but isn't?
5 17 Apr 6, 2022
2:28 PM
Capsid genes
1 15 Apr 6, 2022
1:49 PM
duplicated genes at start/end of genome
6 34 Apr 6, 2022
12:44 PM
In Genbank
9 63 Feb 18, 2022
12:30 PM
New function? Hfq RNA binding protein
7 54 Feb 15, 2022
1:22 PM

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