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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
19 75 Sep 11, 2019
3:22 PM
Choosing Start Sites
Questions about tricky-to-call start sites.
9 42 Feb 25, 2020
7:58 AM
tRNAs
Questions about properly searching for and calling tRNAs.
13 53 Apr 8, 2020
6:17 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
104 328 Mar 31, 2020
9:25 AM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
15 62 Oct 4, 2019
1:28 PM
Request a new function on the SEA-PHAGES official list
45 129 Aug 3, 2019
5:15 PM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
15 55 Dec 17, 2018
11:39 AM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
Gene Numbering Questions and More: Phage SilentRX (UNK)
8 51 Apr 6, 2020
10:00 PM
GeneMark and G rubripertincta
4 241 Mar 21, 2020
4:11 PM
Assembly
1 14 Feb 26, 2020
12:58 PM
Addressing sequencing notes
2 17 Feb 5, 2020
2:15 PM
space for a promoter when changing direction?
2 226 Oct 15, 2019
11:42 AM
Mid-gene deletion causing frameshift and orphams
5 22 Jul 13, 2019
10:01 AM
BLAST score algorithm
1 11 Mar 21, 2019
11:25 AM
Annotations of Microbacterium foliorum
4 273 Mar 14, 2019
9:57 AM
Phage hits not showing in NCBI but 100% to Gordonia …
4 228 Feb 5, 2019
3:00 PM
Submission error
2 23 May 30, 2018
1:26 PM
Best Gordonia model for GeneMark
2 221 Feb 21, 2018
11:14 AM
New HHPred web site
9 91 Nov 6, 2017
11:54 PM
annotating attP site
2 22 Oct 31, 2017
11:31 AM
List of bioinformatic software
1 449 Jun 16, 2016
5:13 PM
Locating Terminase Gene pages: 1 2
11 313 Mar 2, 2016
5:12 PM
Arthrobacter Annotations
2 33 Jan 27, 2016
3:50 PM

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