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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
SMART Function Investigations
As SMART proceeds through their functional assignment investigations, they will share how and what they find, and post it here. Use these investigations to develop your investigations in your classrooms for deeper understanding of phage biology.
2 2 Aug 8, 2023
9:24 AM
Choosing Start Sites
Questions about tricky-to-call start sites.
15 62 Feb 26, 2023
2:10 PM
tRNAs
Questions about properly searching for and calling tRNAs.
24 99 Aug 21, 2023
12:35 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
143 517 Jul 31, 2023
3:31 PM
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
31 112 Apr 27, 2023
11:43 AM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
24 106 Apr 12, 2023
8:59 PM
Request a new function on the SEA-PHAGES official list
51 175 Jun 5, 2023
9:20 PM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
23 96 May 22, 2022
6:03 PM
How to Pass Preliminary Annotation Review
2 6 May 1, 2023
9:14 AM
HHpred
Questions about how to use or interpret results from HHpred.
0 0
Topics Posts Views Last post
Calling an ADP riboosyltransferase in DZ phage Morgana
3 23 Jun 28, 2023
4:17 PM
capsid maturation protease or hypothetical protein (MuF-like minor capsid protein)
6 46 May 31, 2023
6:31 PM
5’nucleotidase v. phosphatase
5 23 Apr 19, 2023
7:55 PM
helix-turn-helix binding domain or protein? pages: 1 2
12 152 Apr 12, 2023
4:56 PM
Membrane proteins pages: 1 2
12 132 Apr 10, 2023
8:15 AM
SSB protein or RecT-like pairing protein
2 16 Apr 3, 2023
8:54 AM
head-to-tail stopper
2 27 Mar 29, 2023
8:54 AM
Kikiko_42
3 23 Mar 28, 2023
4:04 PM
secreted protein?
2 7 Mar 16, 2023
7:42 PM
2022 Genomics Workshop Follow-up Annotation: Ciao pages: 1 2
13 119 Jan 17, 2023
9:11 AM
TAC in FM cluster
6 28 Apr 10, 2022
3:29 PM
Called an orpham but isn't?
5 15 Apr 6, 2022
2:28 PM
Capsid genes
1 15 Apr 6, 2022
1:49 PM
duplicated genes at start/end of genome
6 24 Apr 6, 2022
12:44 PM
In Genbank
9 62 Feb 18, 2022
12:30 PM
New function? Hfq RNA binding protein
7 52 Feb 15, 2022
1:22 PM
Phosphoribosyl transferase new function: Phelipe_64 and Bosnia_40
1 9 Feb 4, 2022
3:16 PM
Is this a sequencing error?
3 19 Jul 15, 2021
10:32 AM
Mid-gene deletion causing frameshift and orphams
6 235 Jun 3, 2021
10:19 AM
List of bioinformatic software
2 472 May 18, 2021
1:13 PM

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