Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.
Recent Activity
Annotation
If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
| Forums | Topics | Posts | Last post |
|---|---|---|---|
|
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
|
19 | 75 |
Sep 11, 2019 3:22 PM |
|
Choosing Start Sites
Questions about tricky-to-call start sites.
|
9 | 42 |
Feb 25, 2020 7:58 AM |
|
tRNAs
Questions about properly searching for and calling tRNAs.
|
13 | 53 |
Apr 8, 2020 6:17 PM |
|
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
|
104 | 328 |
Mar 31, 2020 9:25 AM |
|
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
|
15 | 62 |
Oct 4, 2019 1:28 PM |
|
Request a new function on the SEA-PHAGES official list
|
45 | 129 |
Aug 3, 2019 5:15 PM |
|
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
|
15 | 55 |
Dec 17, 2018 11:39 AM |
|
How to Pass Preliminary Annotation Review
|
2 | 3 |
May 11, 2018 8:25 AM |
| Topics | Posts | Views | Last post |
|---|---|---|---|
| Gene Numbering Questions and More: Phage SilentRX (UNK) ⇨ | 8 | 51 |
Apr 6, 2020 10:00 PM |
| GeneMark and G rubripertincta ⇨ | 4 | 241 |
Mar 21, 2020 4:11 PM |
| Assembly ⇨ | 1 | 14 |
Feb 26, 2020 12:58 PM |
| Addressing sequencing notes ⇨ | 2 | 17 |
Feb 5, 2020 2:15 PM |
| space for a promoter when changing direction? ⇨ | 2 | 226 |
Oct 15, 2019 11:42 AM |
| Mid-gene deletion causing frameshift and orphams ⇨ | 5 | 22 |
Jul 13, 2019 10:01 AM |
| BLAST score algorithm ⇨ | 1 | 11 |
Mar 21, 2019 11:25 AM |
| Annotations of Microbacterium foliorum ⇨ | 4 | 273 |
Mar 14, 2019 9:57 AM |
| Phage hits not showing in NCBI but 100% to Gordonia … ⇨ | 4 | 228 |
Feb 5, 2019 3:00 PM |
| Submission error ⇨ | 2 | 23 |
May 30, 2018 1:26 PM |
| Best Gordonia model for GeneMark ⇨ | 2 | 221 |
Feb 21, 2018 11:14 AM |
| New HHPred web site ⇨ | 9 | 91 |
Nov 6, 2017 11:54 PM |
| annotating attP site ⇨ | 2 | 22 |
Oct 31, 2017 11:31 AM |
| List of bioinformatic software ⇨ | 1 | 449 |
Jun 16, 2016 5:13 PM |
| Locating Terminase Gene ⇨ pages: 1 2 | 11 | 313 |
Mar 2, 2016 5:12 PM |
| Arthrobacter Annotations ⇨ | 2 | 33 |
Jan 27, 2016 3:50 PM |