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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
23 87 Nov 11, 2020
10:35 AM
Choosing Start Sites
Questions about tricky-to-call start sites.
11 45 Nov 11, 2020
3:57 PM
tRNAs
Questions about properly searching for and calling tRNAs.
14 61 Sep 24, 2020
8:24 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
111 347 Nov 24, 2020
7:51 PM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
17 70 Oct 21, 2020
3:12 PM
Request a new function on the SEA-PHAGES official list
47 137 Nov 19, 2020
1:24 AM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
18 64 Oct 6, 2020
9:52 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
Phage Jinkies - error in annotation?
3 20 Nov 17, 2020
2:51 PM
In Genbank
3 12 Sep 4, 2020
4:04 PM
PE/PPE proteins
1 8 Jul 28, 2020
5:37 PM
sigma factors & transcription factors
1 4 May 30, 2020
11:50 AM
Function for Gene 1 of EK1 Phages
7 57 May 21, 2020
4:36 PM
Having trouble getting NCBI Blast data for a gene via …
3 12 May 10, 2020
3:38 PM
Tricky Start position decision: Need 2nd Opinion; Two overlapping Genes …
3 22 May 6, 2020
5:59 PM
General Question on RBS scores and start selection
4 21 May 4, 2020
7:17 AM
Gene or not a gene? MrMiyagi
3 21 May 3, 2020
11:07 PM
Tail Terminator in Cluster EE
3 14 May 1, 2020
4:52 PM
Tricky Start position decision
5 21 Apr 26, 2020
4:40 PM
Gene Numbering Questions and More: Phage SilentRX (UNK)
8 255 Apr 6, 2020
10:00 PM
GeneMark and G rubripertincta
4 245 Mar 21, 2020
4:11 PM
Assembly
1 215 Feb 26, 2020
12:58 PM
Addressing sequencing notes
2 217 Feb 5, 2020
2:15 PM
space for a promoter when changing direction?
2 228 Oct 15, 2019
11:42 AM
Mid-gene deletion causing frameshift and orphams
5 223 Jul 13, 2019
10:01 AM
BLAST score algorithm
1 12 Mar 21, 2019
11:25 AM
Annotations of Microbacterium foliorum
4 276 Mar 14, 2019
9:57 AM
Phage hits not showing in NCBI but 100% to Gordonia …
4 228 Feb 5, 2019
3:00 PM

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