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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
26 98 May 6, 2021
3:50 PM
Choosing Start Sites
Questions about tricky-to-call start sites.
13 55 May 18, 2021
3:55 PM
tRNAs
Questions about properly searching for and calling tRNAs.
15 69 May 25, 2021
1:28 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
118 390 Jul 21, 2021
6:38 PM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
20 93 May 7, 2021
4:42 PM
Request a new function on the SEA-PHAGES official list
49 153 Jul 28, 2021
5:47 PM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
20 74 Jun 28, 2021
12:45 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
Is this a sequencing error?
3 17 Jul 15, 2021
10:32 AM
Mid-gene deletion causing frameshift and orphams
6 233 Jun 3, 2021
10:19 AM
List of bioinformatic software
2 465 May 18, 2021
1:13 PM
Membrane proteins
3 27 Mar 12, 2021
1:49 PM
ORPHAMs
2 12 Mar 3, 2021
12:25 PM
Phage Predator (H1) mis-annotation of lysin A gene?
3 20 Feb 18, 2021
8:35 PM
% alignment
2 12 Feb 15, 2021
12:07 PM
Phage Jinkies - error in annotation?
3 23 Nov 17, 2020
2:51 PM
In Genbank
3 15 Sep 4, 2020
4:04 PM
PE/PPE proteins
1 12 Jul 28, 2020
5:37 PM
sigma factors & transcription factors
1 11 May 30, 2020
11:50 AM
Function for Gene 1 of EK1 Phages
7 62 May 21, 2020
4:36 PM
Having trouble getting NCBI Blast data for a gene via …
3 17 May 10, 2020
3:38 PM
Tricky Start position decision: Need 2nd Opinion; Two overlapping Genes …
3 24 May 6, 2020
5:59 PM
General Question on RBS scores and start selection
4 23 May 4, 2020
7:17 AM
Gene or not a gene? MrMiyagi
3 21 May 3, 2020
11:07 PM
Tail Terminator in Cluster EE
3 15 May 1, 2020
4:52 PM
Tricky Start position decision
5 23 Apr 26, 2020
4:40 PM
Gene Numbering Questions and More: Phage SilentRX (UNK)
8 259 Apr 6, 2020
10:00 PM
GeneMark and G rubripertincta
4 246 Mar 21, 2020
4:11 PM

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