SEA-PHAGES Logo

The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
30 110 Apr 3, 2022
11:39 PM
Choosing Start Sites
Questions about tricky-to-call start sites.
14 58 Apr 5, 2022
4:01 PM
tRNAs
Questions about properly searching for and calling tRNAs.
19 86 Jun 3, 2022
5:08 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
129 447 May 26, 2022
11:05 AM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
22 99 Mar 15, 2022
9:03 AM
Request a new function on the SEA-PHAGES official list
50 163 Apr 22, 2022
8:34 AM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
23 96 May 22, 2022
6:03 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
TAC in FM cluster
6 24 Apr 10, 2022
3:29 PM
Called an orpham but isn't?
5 13 Apr 6, 2022
2:28 PM
Capsid genes
1 3 Apr 6, 2022
1:49 PM
duplicated genes at start/end of genome
6 21 Apr 6, 2022
12:44 PM
In Genbank
9 54 Feb 18, 2022
12:30 PM
New function? Hfq RNA binding protein
7 50 Feb 15, 2022
1:22 PM
helix-turn-helix binding domain or protein?
4 21 Feb 15, 2022
8:38 AM
Phosphoribosyl transferase new function: Phelipe_64 and Bosnia_40
1 9 Feb 4, 2022
3:16 PM
Is this a sequencing error?
3 18 Jul 15, 2021
10:32 AM
Mid-gene deletion causing frameshift and orphams
6 233 Jun 3, 2021
10:19 AM
List of bioinformatic software
2 470 May 18, 2021
1:13 PM
Membrane proteins
3 37 Mar 12, 2021
1:49 PM
ORPHAMs
2 16 Mar 3, 2021
12:25 PM
Phage Predator (H1) mis-annotation of lysin A gene?
3 22 Feb 18, 2021
8:35 PM
% alignment
2 13 Feb 15, 2021
12:07 PM
Phage Jinkies - error in annotation?
3 24 Nov 17, 2020
2:51 PM
PE/PPE proteins
1 12 Jul 28, 2020
5:37 PM
sigma factors & transcription factors
1 12 May 30, 2020
11:50 AM
Function for Gene 1 of EK1 Phages
7 68 May 21, 2020
4:36 PM
Having trouble getting NCBI Blast data for a gene via …
3 19 May 10, 2020
3:38 PM

If you are signed in, you should see a "New Topic" link above here to create a new topic. If you don't, please contact us and let us know.