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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
22 85 May 8, 2020
9:44 AM
Choosing Start Sites
Questions about tricky-to-call start sites.
10 43 Jun 3, 2020
2:31 PM
tRNAs
Questions about properly searching for and calling tRNAs.
14 61 Sep 24, 2020
8:24 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
110 344 Sep 28, 2020
12:33 AM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
17 70 Oct 21, 2020
3:12 PM
Request a new function on the SEA-PHAGES official list
46 135 Aug 6, 2020
11:34 AM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
18 64 Oct 6, 2020
9:52 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
Best Gordonia model for GeneMark
2 224 Feb 21, 2018
11:14 AM
New HHPred web site
9 294 Nov 6, 2017
11:54 PM
annotating attP site
2 25 Oct 31, 2017
11:31 AM
List of bioinformatic software
1 452 Jun 16, 2016
5:13 PM
Locating Terminase Gene pages: 1 2
11 514 Mar 2, 2016
5:12 PM
Arthrobacter Annotations
2 233 Jan 27, 2016
3:50 PM

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