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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
26 98 May 6, 2021
3:50 PM
Choosing Start Sites
Questions about tricky-to-call start sites.
13 55 May 18, 2021
3:55 PM
tRNAs
Questions about properly searching for and calling tRNAs.
15 69 May 25, 2021
1:28 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
118 390 Jul 21, 2021
6:38 PM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
20 93 May 7, 2021
4:42 PM
Request a new function on the SEA-PHAGES official list
49 153 Jul 28, 2021
5:47 PM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
20 74 Jun 28, 2021
12:45 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
Assembly
1 217 Feb 26, 2020
12:58 PM
Addressing sequencing notes
2 219 Feb 5, 2020
2:15 PM
space for a promoter when changing direction?
2 228 Oct 15, 2019
11:42 AM
BLAST score algorithm
1 13 Mar 21, 2019
11:25 AM
Annotations of Microbacterium foliorum
4 279 Mar 14, 2019
9:57 AM
Phage hits not showing in NCBI but 100% to Gordonia …
4 231 Feb 5, 2019
3:00 PM
Submission error
2 224 May 30, 2018
1:26 PM
Best Gordonia model for GeneMark
2 225 Feb 21, 2018
11:14 AM
New HHPred web site
9 297 Nov 6, 2017
11:54 PM
annotating attP site
2 25 Oct 31, 2017
11:31 AM
Locating Terminase Gene pages: 1 2
11 516 Mar 2, 2016
5:12 PM
Arthrobacter Annotations
2 233 Jan 27, 2016
3:50 PM

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