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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

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Annotation

If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
Forums Topics Posts Last post
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
30 110 Apr 3, 2022
11:39 PM
Choosing Start Sites
Questions about tricky-to-call start sites.
14 58 Apr 5, 2022
4:01 PM
tRNAs
Questions about properly searching for and calling tRNAs.
19 86 Jun 3, 2022
5:08 PM
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
129 447 May 26, 2022
11:05 AM
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
22 99 Mar 15, 2022
9:03 AM
Request a new function on the SEA-PHAGES official list
50 163 Apr 22, 2022
8:34 AM
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
23 96 May 22, 2022
6:03 PM
How to Pass Preliminary Annotation Review
2 3 May 11, 2018
8:25 AM
Topics Posts Views Last post
Tricky Start position decision: Need 2nd Opinion; Two overlapping Genes …
3 26 May 6, 2020
5:59 PM
General Question on RBS scores and start selection
4 28 May 4, 2020
7:17 AM
Gene or not a gene? MrMiyagi
3 21 May 3, 2020
11:07 PM
Tail Terminator in Cluster EE
3 16 May 1, 2020
4:52 PM
Tricky Start position decision
5 24 Apr 26, 2020
4:40 PM
Gene Numbering Questions and More: Phage SilentRX (UNK)
8 260 Apr 6, 2020
10:00 PM
GeneMark and G rubripertincta
4 247 Mar 21, 2020
4:11 PM
Assembly
1 217 Feb 26, 2020
12:58 PM
Addressing sequencing notes
2 219 Feb 5, 2020
2:15 PM
space for a promoter when changing direction?
2 228 Oct 15, 2019
11:42 AM
BLAST score algorithm
1 13 Mar 21, 2019
11:25 AM
Annotations of Microbacterium foliorum
4 281 Mar 14, 2019
9:57 AM
Phage hits not showing in NCBI but 100% to Gordonia …
4 232 Feb 5, 2019
3:00 PM
Submission error
2 224 May 30, 2018
1:26 PM
Best Gordonia model for GeneMark
2 225 Feb 21, 2018
11:14 AM
New HHPred web site
9 298 Nov 6, 2017
11:54 PM
annotating attP site
2 27 Oct 31, 2017
11:31 AM
Locating Terminase Gene pages: 1 2
11 516 Mar 2, 2016
5:12 PM
Arthrobacter Annotations
2 234 Jan 27, 2016
3:50 PM

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