Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.
Recent Activity
Annotation
If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
| Forums | Topics | Posts | Last post |
|---|---|---|---|
|
SMART Function Investigations
As SMART proceeds through their functional assignment investigations, they will share how and what they find, and post it here. Use these investigations to develop your investigations in your classrooms for deeper understanding of phage biology.
|
2 | 3 |
Mar 28, 2024 11:58 AM |
|
Choosing Start Sites
Questions about tricky-to-call start sites.
|
15 | 67 |
Feb 21, 2024 7:44 AM |
|
tRNAs
Questions about properly searching for and calling tRNAs.
|
25 | 100 |
Feb 13, 2024 11:17 AM |
|
Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
|
148 | 539 |
Mar 15, 2024 2:18 PM |
|
Gene or not a Gene
Questions about whether or not to call or delete certain genes.
|
34 | 123 |
Feb 17, 2024 8:54 AM |
|
Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
|
25 | 109 |
Feb 28, 2024 10:14 AM |
|
Request a new function on the SEA-PHAGES official list
|
51 | 176 |
Dec 20, 2023 5:16 PM |
|
Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
|
23 | 96 |
May 22, 2022 6:03 PM |
|
How to Pass Preliminary Annotation Review
|
2 | 6 |
May 1, 2023 9:14 AM |
|
HHpred
Questions about how to use or interpret results from HHpred.
|
0 | 0 |