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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

The SEA-PHAGES Program

SEA-PHAGES (Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science) is a two-semester, discovery-based undergraduate research course that begins with simple digging in the soil to find new viruses, but progresses through a variety of microbiology techniques and eventually to complex genome annotation and bioinformatic analyses.

The program aims to increase undergraduate interest and retention in the biological sciences through immediate immersion in authentic, valuable, yet accessible research. By finding and naming their own bacteriophages, students develop a sense of project ownership and have a ready-made personal research project at a fraction of the cost of traditional apprentice-based research programs. Some of the positive effects of the SEA-PHAGES program have been reported here.

SEA-PHAGES is jointly administered by Graham Hatfull's group at the University of Pittsburgh and the Howard Hughes Medical Institute's Science Education division.

SEA-PHAGES IN THE NEWS

  • Thumbnail for Students in interactive course look to discover, name phages

    Students in interactive course look to discover, name phages

    Marlon Morgan

    Western Carolina News | Sept. 30, 2015

    Western Carolina University student Sean Kent didn’t pick the course, but when he saw he was registered for it, the name “Phage Hunters” immediately got his attention. Brooke Burns also found she was placed in the course. After hearing so many other freshmen at orientation say they were excited about WCU’s newest biology/chemistry course, she, too, decided to keep it. Now she says it’s by far her favorite....read more

    Related institution: Western Carolina University

  • UMass Inclusive Excellence Initiative Continues for Third Year

    University of Massachusetts Amherst News and Media Relations | Oct. 14, 2020

    Connor says, “We are delighted with our students’ progress and the power of SEA-PHAGES to excite and engage students in research regardless of their prior experience and background.” She adds, “Courses like SEA-PHAGES teach research skills as part of the curriculum, offering a much more inclusive approach to STEM fields and engaging students early in research experiences.”read more

    Related institution: University of Massachusetts Amherst

  • Thumbnail for Biology 2.0

    Biology 2.0

    Andrea Gaul

    Baylor Arts & Sciences Magazine | May 9, 2017

    Baylor University has implemented a new kind of introductory biology lab that has proven successful in keeping students excited and engaged through hands-on research.read more

    Related institution: Baylor University

  • Thumbnail for First-years discover viruses, analyze DNA

    First-years discover viruses, analyze DNA

    Kate Nussenbaum

    The Brown Daily Herald | Feb. 10, 2012

    Sixteen first-years watched with excitement as their screens loaded the sequence of 59,625 nucleic acids that comprise the DNA of “Job42,” the virus a student in their class had discovered, isolated and named during the fall semester. “Each of them codes for something,” said Jordan Rego...read more

    Related institution: Brown University

  • Thumbnail for Bio major considered dream come true for department

    Bio major considered dream come true for department

    Melanie Greenberg

    Loquitor—Cabrini College Student Media | March 5, 2011

    Surrounded by only her thoughts and glass beekers, one Cabrini student spends much of her time diligently working in the Iadarola Science Center. Katie Mageeney, senior biology major and math and chemistry minor, is anything but an average student. “Katie is definitely dedicated to her lab work,”...read more

    Related institutions: Cabrini University | Lehigh University

  • Thumbnail for Bacteria-busting viruses discovered by student researchers

    Bacteria-busting viruses discovered by student researchers

    Dave Price

    Newport News | July 4, 2022

    "This is Oregon Coast Community College’s first year in the SEA PHAGES program, and I think it was pretty darn successful,” said Matthew Fisher, who teaches biology at OCCC and mentors students during the research project. “The goal is to find new phages, but it’s also about developing the next generation of scientists and getting them excited about doing science at OCCC."read more

    Related institution: Oregon Coast Community College

  • Thumbnail for Round Rock Cedar Ridge grad earns scientific honor

    Round Rock Cedar Ridge grad earns scientific honor

    Mike Schoeffel

    Austin American-Statesman | Feb. 28, 2017

    Isabel Delwel, a junior at the University of North Texas, was chosen to participate in the 2017 Howard Hughes Medical Institute Exceptional Research Opportunities Program. One of Delwel’s professor’s, Dr. Lee Hughes, encouraged Delwel to apply for a spot in the program.read more

    Related institution: University of North Texas

  • Thumbnail for WKU 2012 Goldwater Scholarship Recipient Charles Coomer

    WKU 2012 Goldwater Scholarship Recipient Charles Coomer

    innovateKY/YouTube | April 24, 2012

    Charles Coomer, a junior in the Honors College at WKU and the son of Evell and Don Coomer, has been involved in microbiological research for two years. In the lab of Dr. Rodney King, associate professor of biology, Coomer is characterizing viruses that infect bacterial cells...read more

    Related institution: Western Kentucky University

  • Thumbnail for Undergraduate phage hunters showcase research in University Libraries exhibit

    Undergraduate phage hunters showcase research in University Libraries exhibit

    Alec Masella

    Virginia Tech Library News | April 3, 2018

    From local soil to a global database, new viruses have been uncovered, analyzed, and recorded by undergraduate researchers in Virginia Tech’s College of Science.read more

    Related institution: Virginia Tech

  • Thumbnail for Young Māori scientist discovers virus

    Young Māori scientist discovers virus

    Rukuwai Tipene-Allen

    Māori Television | April 22, 2018

    Young, Māori scientist Anezka Hoskins has discovered a new virus and is hopeful that it will spark curiosity amongst Māori to push boundaries of knowledge.read more

    Related institution: Massey University

  • Thumbnail for  Steele commended by Nobel Prize winner for her work

    Steele commended by Nobel Prize winner for her work

    Barbara Phillips

    Archer County News | April 21, 2016

    It is not often that a freshman in college is approached and commended for research by a Nobel Prize winner, but that is exactly what happened to Archer City graduate, London Steele, now a freshman at Baylor University....read more

    Related institution: Baylor University

  • Columbia State students place first in scientific research at state academy

    Jay Powell

    Columbia Daily Herald | Feb. 3, 2021

    Columbia State Community College can now add another first-place accolade to its esteemed alumni, this time in the category of scientific research.read more

    Related institution: Columbia State Community College

  • Thumbnail for Queens University student discovers a virus strain

    Queens University student discovers a virus strain

    Reid Creager

    The Charlotte Observer | April 16, 2016

    Sydney Dishman’s new pet isn’t cute and certainly isn’t something you’d want to cuddle with. But she feels good just thinking about it. Her “pet” is named Rex16, after the Queens University of Charlotte mascot and her year of graduation. Rex16 is a bacteriophage species she discovered while completing her honors research thesis, investigating bacteriophages in local soil samples....read more

    Related institution: Queens University of Charlotte

  • Thumbnail for Going viral: C of I students attend HHMI symposium

    Going viral: C of I students attend HHMI symposium

    The College of Idaho—Student News | Aug. 4, 2015

    Jetblade. The name might sound like the newest Marvel superhero to hit the big screen, but it’s actually the newest bacterial virus analyzed by College of Idaho students....read more

    Related institution: College of Idaho

  • Thumbnail for Freshmen participate in huge research study on tiny viruses

    Freshmen participate in huge research study on tiny viruses

    CU Boulder Today | May 1, 2015

    A new study appearing this week in the scientific journal eLIFE about the rapid evolution of small viruses that infect bacteria includes 59 University of Colorado Boulder co-authors, all of whom conducted research for the paper as freshmen....read more

    Related institution: University of Colorado Boulder

Message in a Bottle, issue 10

The new issue of Message in a Bottle is available! Download it here.

Sequencing Status, 2024-25

Below is a live spreadsheet showing the status of SEA-PHAGES sequencing samples (among other things) for the 2024-25 academic year. Generally, samples are only listed after they're scheduled for a sequencing run, so don't worry if the samples you sent haven't appeared yet.

CLICK HERE to open this in a new browser window.

 

2024 SEA Symposium FAQ

Below are some guidelines to help you and your students prepare for the upcoming symposium. These include guidelines for:

 

IMPORTANT DATES
March 18, 2024:          Deadline to register for the Symposium.
March 18, 2024:          Deadline for abstract submission.
March 21, 2024:          Those selected to give talks will be notified.
April 5, 2024:               Deadline to upload Posters to the symposium website.
April 12 – 14, 2024:     Attend the symposium.

 

REGISTRATION

Who should register?
All SEA faculty, and all SEA student-researchers from the 2023 - 2024 academic year, are invited to register and attend the 2024 SEA symposium.

How do I register?
All SEA faculty members will receive instructions and a registration link by email on March 4, 2024. You will be asked to forward a registration email to your students. Registration will close March 18, 2024.
 

ABSTRACTS & POSTERS

Who should submit abstracts and posters?
SEA Faculty are responsible for submitting all abstracts and posters.
Poster abstracts will be submitted via the seaphages.org program website (see link within your institution's homepage on seaphages.org)
Final posters will be uploaded to the symposium meeting website. Instructions for abstract and poster submissions are provided below.

How many posters should be submitted?
We encourage each section of SEA students to submit one poster that describes their SEA research from the 2023 – 2024 academic year. If your school has multiple SEA sections, PHAGES or GENES, you may choose to submit one poster for each section or research project, or you can choose to submit one poster that summarizes the work of many sections or projects.

What is the format for each poster?

Posters should be prepared as a single Powerpoint slide using the Poster resource on QUBES prepared by SEA faculty, and saved as a PDF file. During the poster session, presenters will refer to this single slide PDF when presenting.

 

What should I include in my abstract(s) and poster(s)?
Given that the symposium will happen during your ongoing research semester, your poster will likely feature your ongoing work-in-progress. This is a great opportunity for you to discuss your research with your SEA colleagues and get feedback to inform your ongoing research. The QUBES Poster resource provides guidance on how to develop your poster with your students to facilitate an exchange of ideas during the symposium.

Your abstract will represent a summary of what will be included in your poster. There is a 3,000 character-limit for abstracts.

What is the format for the poster session?

The poster sessions will be live sessions hosted in Gathertown, which is a virtual space designed as a yacht where participants can move around using the arrow keys on their keyboard and can connect with others via video and audio based on proximity.

In this virtual space, each submitted poster will have an assigned space, and 2 poster presenters should stand by their poster. As an attendee walks up to a poster, their video and audio will connect with the poster presenter. A link at each poster allows the attendee and presenter to both view the single poster slide at the same time. A video tutorial about the yacht and the poster session will be provided soon.

Here are a some of additional logistics and recommendations:

  • The poster session on Saturday will be for even-numbered posters, whereas the poster session on Sunday will be for odd-numbered posters.  Poster presenters can locate their poster number on the Symposium meeting site (Whova platform), and should then plan to present at their respective poster session.
  • While any individual student is unlikely to be able to visit all the posters being presented during the dedicated poster sessions, collectively your group of students may be able to. Much the same way in which a few members of a lab who attend a scientific meeting return to share the science they learned with the rest of the lab, we encourage you to consider organizing a post-symposium lab group meeting where your students can share with the group what they each learned from the various posters they attended. If you are considering implementing this, it may be worth informing students of your plans before they attend the symposium.
  • Since all symposium attendees will continue to have access to the symposium meeting site for several months after the symposium is over, we encourage you to continue engaging your students with the various posters as part of their ongoing PHAGES and GENES research.


How do I submit my abstract(s)?
Once you are signed in at seaphages.org, links to add, modify, or view an abstract are provided at the top of your institution page. Abstracts should by March 18, 2024.

How do I submit my poster(s)?
Once you have submitted your abstracts, SEA staff will send you a unique link for each poster. With this unique link, you will be able to upload your single-slide poster to the Symposium Meeting Website.

 

TALKS  

Yes! If you would like your abstract to be considered for a talk, you can indicate so during the abstract submission. If your abstract is selected for a talk, you will be notified by March 21.
We encourage you to submit a poster even if you are selected to give a talk, since the poster session is an additional and important opportunity for faculty and student co-authors, and other symposium attendees to interact and discuss research.


What are the formats for talks?
We have 3 types of sessions for talks:

  • SEA Research Sessions: These sessions will include several back-to-back 10-minute talks (+3 minutes for Q&A). Talks will be presented live. Speakers will be invited to a practice session in the weeks prior to the meeting so that they are familiar with the technology.
  • SEA Lead Scientist Session: This 50-min presentation will feature our SEA-PHAGES lead scientist, Graham Hatfull.
  • Keynote Session: The keynote presentation by Joseph Bondy-Denomy will be presented in two parts.
    • Part.1 will be a pre-recorded presentation that will be made available to all attendees the week of April 1, and
    • Part.2, which builds on Part.1, will be a live presentation during the symposium. All attendees should watch Part.1 ahead of the symposium. We encourage faculty and students to watch and discuss Part.1 together.
       

OTHER

How will symposium attendees be able to interact?

The entire Symposium will be hosted in Gathertown, a virtual meeting platform. This means all attendees can connect with one another, via video and audio, throughout the meeting.

  • Talks will be hosted in the conference rooms in Gathertown, and attendees will be able to walk up to a virtual microphone to ask questions. Attendees can also use the live chat to ask questions.
  • Posters will be hosted in the poster rooms in Gathertown, and attendees will be engage with poster presenters by video and audio during the poster session. Posters will continue to be available for viewing outside of the dedicated poster sessions.
  • For all other times, including socials, we encourage all attendees to wander the virtual spaces in Gathertown built for the Symposium. You will be able to interact with one another via video and audio, and you can also interact with games, watch HHMI shows, and more! We encourage attendees to use this space to meet between or after sessions to discuss science, or to simply catch up with old friends and to meet and make new friends.
     

What are important dates?
March 18, 2024:          Deadline to register for the Symposium.
March 18, 2024:          Deadline for abstract submission.
March 21, 2024:          Those selected to give talks will be notified.
April 5, 2024:               Deadline to upload Posters to the symposium website.
April 12 – 14, 2024:     Attend the symposium.

Upcoming Events

2024 Phage Genomics Workshop

December 13, 2024 to December 17, 2024

2025 SEA Symposium

April 25, 2025 to April 27, 2025

2025 SEA Faculty Meeting

June 6, 2025 to June 9, 2024

Recent Events

2024 Phage Discovery Workshop 17B

July 13, 2024 to July 19, 2024

Phage Discovery Workshop 17B

July 13, 2024 to July 19, 2024