Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.
Recent Activity
fbaliraine posted in Phage DoRead Start at 52714 bp with 8 bp overlap vs start at 52718 with 4 bp overlap?
Debbie Jacobs-Sera posted in Phage DoRead Start at 52714 bp with 8 bp overlap vs start at 52718 with 4 bp overlap?
hnance@ccga.edu posted in DNA Master not updating
Annotation
If your question fits into one of the sub-forums below, please post it there. If not, create a new topic on this page.
| Forums | Topics | Posts | Last post |
|---|---|---|---|
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SMART Function Investigations
As SMART proceeds through their functional assignment investigations, they will share how and what they find, and post it here. Use these investigations to develop your investigations in your classrooms for deeper understanding of phage biology.
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3 | 6 |
May 28, 2024 8:03 AM |
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Choosing Start Sites
Questions about tricky-to-call start sites.
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17 | 72 |
Mar 27, 2025 3:02 PM |
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tRNAs
Questions about properly searching for and calling tRNAs.
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26 | 103 |
Sep 30, 2024 7:37 AM |
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Functional Annotation
Questions about whether or not to call functions, or precisely how to call them.
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151 | 559 |
Mar 26, 2025 8:28 PM |
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Gene or not a Gene
Questions about whether or not to call or delete certain genes.
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36 | 133 |
Feb 4, 2025 1:09 AM |
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Frameshifts and Introns
This forum is for asking questions about annotatiing frameshifts in the tail assembly chaperone genes and intron boundaries in Cluster J phages.
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25 | 109 |
Feb 28, 2024 10:14 AM |
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Request a new function on the SEA-PHAGES official list
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52 | 186 |
Jul 16, 2024 10:20 PM |
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Notes and Final Files
Questions about required notes in DNA Master and submitting final annotation files.
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23 | 98 |
Jan 20, 2025 7:14 PM |
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How to Pass Preliminary Annotation Review
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2 | 6 |
May 1, 2023 9:14 AM |
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HHpred
Questions about how to use or interpret results from HHpred.
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0 | 0 |
| Topics | Posts | Views | Last post |
|---|---|---|---|
| Tricky Start position decision ⇨ | 5 | 25 |
Apr 26, 2020 4:40 PM |
| Gene Numbering Questions and More: Phage SilentRX (UNK) ⇨ | 8 | 260 |
Apr 6, 2020 10:00 PM |
| GeneMark and G rubripertincta ⇨ | 4 | 253 |
Mar 21, 2020 4:11 PM |
| Assembly ⇨ | 1 | 217 |
Feb 26, 2020 12:58 PM |
| Addressing sequencing notes ⇨ | 2 | 219 |
Feb 5, 2020 2:15 PM |
| space for a promoter when changing direction? ⇨ | 2 | 233 |
Oct 15, 2019 11:42 AM |
| BLAST score algorithm ⇨ | 1 | 15 |
Mar 21, 2019 11:25 AM |
| Annotations of Microbacterium foliorum ⇨ | 4 | 285 |
Mar 14, 2019 9:57 AM |
| Phage hits not showing in NCBI but 100% to Gordonia … ⇨ | 4 | 234 |
Feb 5, 2019 3:00 PM |
| Submission error ⇨ | 2 | 225 |
May 30, 2018 1:26 PM |
| Best Gordonia model for GeneMark ⇨ | 2 | 225 |
Feb 21, 2018 11:14 AM |
| New HHPred web site ⇨ | 9 | 302 |
Nov 6, 2017 11:54 PM |
| Locating Terminase Gene ⇨ pages: 1 2 | 11 | 518 |
Mar 2, 2016 5:12 PM |
| Arthrobacter Annotations ⇨ | 2 | 235 |
Jan 27, 2016 3:50 PM |