SEA-PHAGES Logo

The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

All posts created by debbie

| posted 04 Feb, 2025 01:13
That would be great!
Posted in: PECAANPractice Annotation with PECAAN?
| posted 03 Feb, 2025 21:34
Hi Levi,
When you enter your phage, give it an additional notation like, QuinnAvery_UDM. and yes, please delete when you are done.
Department computers can be really good, because once they are set up, they are good to go! OR they can be problematic because IT wipes all machines clean every night. Please try to stick with that on your end (not as a class item), and get IT to see what needs to be done to get this working. It is worth the time.
best,
debbie
Posted in: PECAANPractice Annotation with PECAAN?
| posted 28 Jan, 2025 21:19
You can install in a different place (like your desktop) and see if that works, then delete the old stuff.
Posted in: DNA MasterIssue uninstalling DNA Master
| posted 28 Jan, 2025 21:08
Hi Levi,
I am not sure I have ever seen this.
Did you just try deleting it?
If you are installing it in a different location, it may not matter.
best,
debbie
Posted in: DNA MasterIssue uninstalling DNA Master
| posted 26 Jan, 2025 01:50
Fred,
There is no way to adjust DNA Master.
best,
debbie
Posted in: DNA MasterIs there a Way to Adjust the Letter font Size in DNA Master?
| posted 22 Jan, 2025 22:52
Thanks Chris! This is awesome!
best,
debbie
Posted in: StarteratorWhole phage starterator reports
| posted 22 Jan, 2025 19:22
Hi all,
I think there is bacterial contamination at play. But hard to tell, no phage or host is named.
anyone want to help a girl out?
debbie
Posted in: Phage Discovery/IsolationPlaques appear on spot test, don't appear in titer
| posted 17 Jan, 2025 17:22
Iain,
Refer back to the installation guide https://phagesdb.org/DNAMaster/ and see if the Chromo Book has the right specs. I am guessing that it does not. But check and see!
Best,
debbie
Posted in: DNA MasterDNA Master and Chromebook
| posted 13 Jan, 2025 19:09
Hi all,
the most likely reason that you are not updating is that you are not running as an administrator. If IT is doing it, they will have privilege. If you are doing it, DON'T install in Program files, instead install elsewhere, like the desktop. Right click on the program, run as administrator to complete the update.
debbie
Posted in: DNA MasterCritical Update: Installing New Copies of DNA Master or Updating Old Versions of DNA Master prior to Version 2701
| posted 09 Jan, 2025 02:56
Cool paper about the tRNA expressed in the prophage (Fionnbharth) in M. smegmatis mc2. 155.
https://journals.asm.org/doi/10.1128/mbio.03260-23
It is a VERY atypical bench determined expression of a tRNA.
Posted in: Cluster K Annotation TipsBacteriophage tRNA-dependent lysogeny