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Recent Activity
All posts created by scaruso
| Link to this post | posted 26 Jun, 2021 21:50 | |
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Good afternoon, After so many years of the VM working flawlessly for me, it was bound to be my turn. To avoid pestering Christian, I simply started fresh with a new VM download and install and followed the instructions on how to make the changes to the new pipeline following his video. Only - I don't have a "Validation" folder as expected this time. Huh. That means there is nowhere to put the newer config file and no way to check files. Any idea what I could have done wrong? |
| Link to this post | posted 23 Jun, 2021 14:55 | |
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I have noticed that students and TAs with newer devices are running into problems downloading, even if I put it in a Google Drive, or running it if they can. They get error messages, sometimes that it is infected with a virus, sometimes others. I am no computer science person, but is it possible that the software of newer computers has moved past an older program and is causing problems that is going to get worse and worse? If so, do we have any ideas of how to proceed if we loose DNA Master? Steve |
Posted in: DNA Master → DNA master server down?
| Link to this post | posted 09 Jun, 2021 23:22 | |
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Thank you! Steve |
Posted in: DNA Master → DNA master server down?
| Link to this post | posted 09 Jun, 2021 15:39 | |
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My computer is about to be reformatted, as it happens, which means I am about to loose DNAM. Any chance someone could send me a copy of DNAM or something? I kind'a need a working copy desperately. Steve |
Posted in: DNA Master → DNA master server down?
| Link to this post | posted 09 Jun, 2021 15:26 | |
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Can I ask a dumb question? I have students who are trying to download this for their PCs now and can't on any browser. And not for a virtual machine. Is it simply not possible to access DNA Master anymore without significant effort? Steve |
Posted in: DNA Master → DNA master server down?
| Link to this post | posted 18 Mar, 2021 18:54 | |
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What excellent timing. Steve |
Posted in: Frameshifts and Introns → No frameshift in cluster BK1?
| Link to this post | posted 17 Mar, 2021 23:12 | |
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I was just QC'ing TunaTartare, a BK1, and came across this thread as it was growing. I was about to chime in that TT has the CCCAAAT, but Chris just beat me to it. And with a lot more as well! Steve |
Posted in: Frameshifts and Introns → No frameshift in cluster BK1?
| Link to this post | posted 25 Sep, 2020 00:24 | |
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Chris, Excellent. And thank you for the very clear directions with sample. Worked perfectly. Steve |
Posted in: tRNAs → tRNAScan-SE Down-ish?
| Link to this post | posted 24 Sep, 2020 20:07 | |
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Thank you, Chris. I will give that a try! Steve |
Posted in: tRNAs → tRNAScan-SE Down-ish?
| Link to this post | posted 24 Sep, 2020 12:02 | |
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Thank you. I am going to advise they use Aragorn for now and revisit with tRNAScan-SE later in the semester, unless you suggest otherwise. Steve |
Posted in: tRNAs → tRNAScan-SE Down-ish?