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All posts created by scaruso

| posted 02 Mar, 2018 16:50
Well, I inadvertently expanded it to other clusters that are missing them, I apologize.

But it is an interesting problem we have run into. We didn't see them in our BG phage, and haven't found them in any of our BI(2 or 4) phages.

Steve
Edited 02 Mar, 2018 16:58
Posted in: Cluster B Annotation TipsTail assembly chaperones?
| posted 01 Mar, 2018 22:31
We have looked very closely on all our Strep. phages (BG, BH, BI, etc.), and couldn't find them. I'm glad it's not just us. But we'll keep looking!
Posted in: Cluster B Annotation TipsTail assembly chaperones?
| posted 23 Feb, 2018 19:52
I was able to use it today.

Steve
Posted in: DNA MasterGenerating GenBank files
| posted 14 Feb, 2018 13:28
It is working now. I can see an update has been done, there may be causation in the correlation, though I do not know for sure.

Steve
Posted in: Web Phameratorweb phamerator phreezing up
| posted 23 Jan, 2018 16:24
A new update seems to have it working again.

Steve
Posted in: DNA Master%ANI
| posted 22 Jan, 2018 20:08
Dan Russell
Steven Caruso
Those of us who use any of the alternate hosts still have to use the VM, sadly.

Steve

For now! I know the other Steve C. is working on having multiple databases available online, so at some point that will no longer be the case.

–Dan

Ever forward!

Steve
Posted in: SEA-PHAGES Virtual MachineStudent download of 2016 VM
| posted 22 Jan, 2018 20:02
Those of us who use any of the alternate hosts still have to use the VM, sadly.

Steve
Posted in: SEA-PHAGES Virtual MachineStudent download of 2016 VM
| posted 18 Jan, 2018 16:05
Lee,

I'm glad it isn't just me! I have been using OrthoAni here: https://www.ezbiocloud.net/tools and it's very nice, but you are limited to 10 genomes at a time, even if you install it.

Steve
Posted in: DNA Master%ANI
| posted 17 Jan, 2018 18:36
Here is what I see when I try to load genomes. Any help would be appreciated.

Steve
Posted in: DNA Master%ANI
| posted 13 Jan, 2018 16:47
I do see the commands, but the GenBank files come up with no useful data according to DNAM. It's very odd. If I use one of my own files, it works great. But when I fetch by accession, I get empty files.

Any thoughts?

Steve
Edited 17 Jan, 2018 18:08
Posted in: DNA Master%ANI