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Recent Activity
cdshaffer posted in Alphafold models of minor tail proteins
pchien posted in Alphafold models of minor tail proteins
pchien posted in Alphafold models of minor tail proteins
Debbie Jacobs-Sera posted in Adding genes in right arm of AS2 genomes
seaphages_usc posted in Adding genes in right arm of AS2 genomes
All posts created by scaruso
| Link to this post | posted 02 Mar, 2018 16:50 | |
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Well, I inadvertently expanded it to other clusters that are missing them, I apologize. But it is an interesting problem we have run into. We didn't see them in our BG phage, and haven't found them in any of our BI(2 or 4) phages. Steve |
Posted in: Cluster B Annotation Tips → Tail assembly chaperones?
| Link to this post | posted 01 Mar, 2018 22:31 | |
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We have looked very closely on all our Strep. phages (BG, BH, BI, etc.), and couldn't find them. I'm glad it's not just us. But we'll keep looking! |
Posted in: Cluster B Annotation Tips → Tail assembly chaperones?
| Link to this post | posted 23 Feb, 2018 19:52 | |
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I was able to use it today. Steve |
Posted in: DNA Master → Generating GenBank files
| Link to this post | posted 14 Feb, 2018 13:28 | |
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It is working now. I can see an update has been done, there may be causation in the correlation, though I do not know for sure. Steve |
Posted in: Web Phamerator → web phamerator phreezing up
| Link to this post | posted 23 Jan, 2018 16:24 | |
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A new update seems to have it working again. Steve |
Posted in: DNA Master → %ANI
| Link to this post | posted 22 Jan, 2018 20:08 | |
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Dan RussellSteven Caruso Ever forward! Steve |
Posted in: SEA-PHAGES Virtual Machine → Student download of 2016 VM
| Link to this post | posted 22 Jan, 2018 20:02 | |
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Those of us who use any of the alternate hosts still have to use the VM, sadly. Steve |
Posted in: SEA-PHAGES Virtual Machine → Student download of 2016 VM
| Link to this post | posted 18 Jan, 2018 16:05 | |
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Lee, I'm glad it isn't just me! I have been using OrthoAni here: https://www.ezbiocloud.net/tools and it's very nice, but you are limited to 10 genomes at a time, even if you install it. Steve |
Posted in: DNA Master → %ANI
| Link to this post | posted 17 Jan, 2018 18:36 | |
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Here is what I see when I try to load genomes. Any help would be appreciated. Steve |
212KbPosted in: DNA Master → %ANI
| Link to this post | posted 13 Jan, 2018 16:47 | |
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I do see the commands, but the GenBank files come up with no useful data according to DNAM. It's very odd. If I use one of my own files, it works great. But when I fetch by accession, I get empty files. Any thoughts? Steve |
Posted in: DNA Master → %ANI