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cdshaffer posted in Whole phage starterator reports
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Debbie Jacobs-Sera posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
nic.vega posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
All posts created by welkin
| Link to this post | posted 17 Apr, 2018 12:53 | |
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some minor tail proteins are upstream of the terminase, instead of after the tape measure. |
Posted in: Cluster AQ Annotation Tips → tail proteins
| Link to this post | posted 17 Apr, 2018 12:39 | |
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That is a new one to me. I would recreate the documentation of the bad file and save it into a text file. Then I would make a whole new .dnam5 file by importing the sequence etc. Instead of autoannotating, copy the documentation from the text file into the documentation tab and then parse it. Save the whole thing with a new name. Hopefully that will work… |
Posted in: DNA Master → Corrupted files for merge
| Link to this post | posted 17 Apr, 2018 12:36 | |
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we do not know where the tail assembly chaperones are. |
Posted in: Cluster AP Annotation Tips → Tail assembly chaperones?
| Link to this post | posted 16 Apr, 2018 17:18 | |
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we do not know where the tail assembly chaperones are for cluster AM |
Posted in: Cluster AM Annotation Tips → Tail assembly chaperones?
| Link to this post | posted 16 Apr, 2018 17:17 | |
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Cluster AM has a capsid fusion protein, in which the capsid maturation protease, scaffolding protein, and major capsid protein are all encoded by a single gene. |
Posted in: Cluster AM Annotation Tips → capsid fusion
| Link to this post | posted 16 Apr, 2018 17:16 | |
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the tape measure protein is found amidst the minor tail proteins, rather than at the beginning of them. |
Posted in: Cluster AM Annotation Tips → tape measure
| Link to this post | posted 16 Apr, 2018 17:16 | |
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Cluster AM has only one lysin, it should be labeled "lysin A" and not the generic "endolysin". |
Posted in: Cluster AM Annotation Tips → lysin A
| Link to this post | posted 16 Apr, 2018 17:15 | |
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Cluster AM has two major tail genes instead of one. |
Posted in: Cluster AM Annotation Tips → two major tail genes
| Link to this post | posted 16 Apr, 2018 17:13 | |
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the "t" of the tail assembly chaperones was not added to many of the Cluster AL annotations and we do not know where the frameshift is. Moving forward from April 2018, the "T" gene should be added to the annotations (even though it is tiny)— that way we will have a place holder in the annotations for the longer fusion when we find the slippery sequence. |
Posted in: Cluster AL Annotation Tips → Tail assembly chaperones?
| Link to this post | posted 16 Apr, 2018 17:11 | |
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Cluster ALs do not have a lysin B. |
Posted in: Cluster AL Annotation Tips → no lysin B