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Recent Activity
cdshaffer posted in Whole phage starterator reports
cdshaffer posted in Fin anti-sigmaF factor
uOttawaPHAGE posted in Fin anti-sigmaF factor
Debbie Jacobs-Sera posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
nic.vega posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
All posts created by welkin
| Link to this post | posted 17 Dec, 2018 16:09 | |
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I agree! I coulnd't find any strong evidence of the head-to-tail connectors in any of the genes in the DJs. |
Posted in: Cluster DJ Annotation Tips → head-to-tail connector complex
| Link to this post | posted 12 Dec, 2018 20:54 | |
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sounds good to me! |
Posted in: Request a new function on the SEA-PHAGES official list → adenylosuccinate lyase for Hiyaa gene 75 @55288
| Link to this post | posted 03 Dec, 2018 13:12 | |
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Hi Evan, So here's some questions: How big are these types of enzymes in general? Does the phage gene encompass the entire enzyme or just the N-terminal domain? Is the N-terminal domain where the catalytic activity is, or is it just a binding region? Best, Welkin |
| Link to this post | posted 15 Nov, 2018 13:05 | |
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Hi Ruth, Only if there is a specific function. Thanks for checking. |
Posted in: Functional Annotation → marking HHpred for unknown function
| Link to this post | posted 19 Oct, 2018 19:11 | |
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yep– totally agree with Debbie— there isn't enough of it left to warrant "immunity repressor, truncated". |
Posted in: Functional Annotation → Truncated Immunity Repressor
| Link to this post | posted 25 Sep, 2018 17:06 | |
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Cluster S phages have an unusual structural gene organization— some of the minor tail proteins are way over in the right arm. see: https://www.ncbi.nlm.nih.gov/pubmed/22357284 |
| Link to this post | posted 23 Aug, 2018 18:13 | |
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sounds good. I'll add both. |
Posted in: Request a new function on the SEA-PHAGES official list → new type of nucleotide pyrophosphohydrolase
| Link to this post | posted 23 Aug, 2018 13:44 | |
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so we already have ADP-ribosyltransferase— how is this different, other than the name? |
| Link to this post | posted 21 Aug, 2018 17:31 | |
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There appears to be a predicted tRNA within the boundaries of the predicted tail sheath protein in some of the Cs. In this case, the tRNA should be removed from the annotation. |
Posted in: Cluster C Annotation Tips → tRNA vs tail sheath
| Link to this post | posted 20 Aug, 2018 15:57 | |
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Thanks guys– I left the "2" out of the starting post. You are all correct: B1s do have lysin B. |
Posted in: Cluster B Annotation Tips → Lysin B