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Recent Activity
All posts created by welkin
| Link to this post | posted 24 Apr, 2018 12:56 | |
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The ParB in the AOs should be labeled "ParB-like nuclease domain". These phages are not temperate and there is no ParA partner in the genome to allow for plasmid like partitioning of the prophage genome. |
Posted in: Cluster AO Annotation TIps → ParB proteins
| Link to this post | posted 24 Apr, 2018 12:53 | |
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Lysin A is encoded by two adjacent genes within cluster AN, and each portion should be labeled with its specific domain, for example "lysin A, peptidase domain" |
Posted in: Cluster AN Annotation Tips → lysin A in two parts
| Link to this post | posted 24 Apr, 2018 12:51 | |
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The major capsid protein, scaffolding protein, and protease are all encoded by a single gene. |
Posted in: Cluster AN Annotation Tips → capsid fusion
| Link to this post | posted 24 Apr, 2018 12:49 | |
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The major capsid protein, scaffolding protein, and capsid maturation protein are fused into a single protein and encoded by a single gene. |
Posted in: Cluster AU Annotation Tips → capsid fusion
| Link to this post | posted 24 Apr, 2018 12:48 | |
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The tape measure protein is located amidst the minor tail proteins, rather than upstream of them all. |
Posted in: Cluster AU Annotation Tips → tape measure
| Link to this post | posted 24 Apr, 2018 12:48 | |
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Cluster AU phages have two genes that appear to encode major tail proteins. |
Posted in: Cluster AU Annotation Tips → two major tail genes
| Link to this post | posted 24 Apr, 2018 12:46 | |
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there are many many membrane proteins in the AM phages. this makes it very difficult to identify the holin. |
Posted in: Cluster AM Annotation Tips → many membrane proteins
| Link to this post | posted 24 Apr, 2018 12:44 | |
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The partitioning proteins in the AL phages are the "ParB-like nuclease domain" type, and not the sets that are actually causing plasmid partitioning for the prophage. There is no evidence that the AL phages are temperate. |
Posted in: Cluster AL Annotation Tips → ParB proteins
| Link to this post | posted 24 Apr, 2018 12:36 | |
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AK phages have an extra domain fused to their portal proteins. This domain is similar to the F gene of phage Mu, which is a protein involved in capsid morphogenesis. This gene should be labeled "portal and MuF-like fusion protein" Revised: Do not call any of the MuF-like minor capsid proteins for now. (6/16/21) |
Posted in: Cluster AK Annotation Tips → Portal and MuF-like
| Link to this post | posted 24 Apr, 2018 12:18 | |
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done. |