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All posts created by welkin
| Link to this post | posted 13 Apr, 2018 19:03 | |
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lysin A is found within the group of minor tail protein in the left arm, rather than upstream or downstream of all the structural genes. |
| Link to this post | posted 13 Apr, 2018 18:59 | |
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Cluster CU contains a phage that was not isolated and sequenced by the SEA-PHAGES program. Its finders annotated the genome differently. We do not curate, update, or QC this genome. This phage is: Gsput1 |
Posted in: Cluster CU Annotation Tips → non SEA-PHAGES genomes
| Link to this post | posted 13 Apr, 2018 18:55 | |
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Lysin B is not found adjacent to Lysin A in a lysis cassette— instead it is located over in the right arm. |
Posted in: Cluster CS Annotation Tips → lysin B in right arm
| Link to this post | posted 13 Apr, 2018 18:54 | |
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Lysin A, which is a single multi-domain protein in many Actinobacteriophages, is split at the domain boundaries encoded by two adjacent genes in cluster CS. The functions should be reported as "lysin A, whatever the domain is" to indicate that each gene does not encode the full lysin A. |
Posted in: Cluster CS Annotation Tips → lysin A in two parts
| Link to this post | posted 13 Apr, 2018 18:53 | |
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Cluster CS contains some phages that were not isolated and sequenced by the SEA-PHAGES program. Their finders chose a different bp1 than we did, and annotated their genomes differently. We do not curate, update, or QC these genomes. These phages are: GMA7 and GTE7 |
Posted in: Cluster CS Annotation Tips → non SEA-PHAGES genomes
| Link to this post | posted 13 Apr, 2018 18:39 | |
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Lysin B is not found adjacent to Lysin A in a lysis cassette— instead it is located over in the right arm. |
Posted in: Cluster CT Annotations Tips → lysin B in right arm
| Link to this post | posted 13 Apr, 2018 18:36 | |
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Cluster CT contains a phage that was not isolated and sequenced by the SEA-PHAGES program. Its finders annotated the genome differently. We do not curate, update, or QC this genome. This phage is: GTE2 |
Posted in: Cluster CT Annotations Tips → non SEA-PHAGES genomes
| Link to this post | posted 13 Apr, 2018 18:34 | |
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Lysin A, which is a single multi-domain protein in many Actinobacteriophages, is split at the domain boundaries encoded by two adjacent genes in cluster CT. The functions should be reported as "lysin A, whatever the domain is" to indicate that each gene does not encode the full lysin A. |
Posted in: Cluster CT Annotations Tips → lysin A in two parts
| Link to this post | posted 13 Apr, 2018 18:33 | |
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Lysin A, which is a single multi-domain protein in many Actinobacteriophages, is split at the domain boundaries encoded by two adjacent genes in cluster CR. The functions should be reported as "lysin A, whatever the domain is" to indicate that each gene does not encode the full lysin A. |
Posted in: Cluster CR Annotation Tips → lysin A in two parts
| Link to this post | posted 13 Apr, 2018 18:31 | |
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Cluster CR contains some phages that were not isolated and sequenced by the SEA-PHAGES program. Their finders chose a different bp1 than we did, and annotated their genomes differently. We do not curate, update, or QC these genomes. These phages are: GRU1, GTE5, and GTE8. |
Posted in: Cluster CR Annotation Tips → non SEA-PHAGES genomes