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Recent Activity

All posts created by Tamarah_Adair

Link to this post \| posted 24 Jul, 2018 17:44
Tamarah_Adair	Thanks

Posted in: PECAAN → New Features in PECAAN

Link to this post \| posted 24 Jul, 2018 15:50
Tamarah_Adair	Hi Claire, I have used Pecaan to annotate Sonali. This is the first time I have used it and I am now exporting the files. Is there a way to place the Function in the Function box for the complete annotations? Thank you, Tammy

Posted in: PECAAN → New Features in PECAAN

Link to this post \| posted 11 Jun, 2018 20:37
Tamarah_Adair	We have tested these primers specific for the tapemeasure protein for Arthrobacter phages isolated on ATCC 21022. 1.40Mb

Posted in: Arthrobacter → Arthrobacter Cluster specific primers

Link to this post \| posted 14 May, 2018 20:43
Tamarah_Adair	HMM. Thanks. I just tried a gene from Sonali and got the OLE 80040152 error.

Posted in: DNA Master → DNAMaster BLAST failure

Link to this post \| posted 14 May, 2018 12:27
Tamarah_Adair	Yea. I am using the SEAPHAGE connection in the same way that we have used all semester. A few weeks ago were able to BLAST ELESAR. I tried a couple of genomes on several computers and then asked my TA to try on her PC. She got the same errors. She was going to reinstall DNAMaster and try again. Are you able to BLAST within DNAMAster?

Posted in: DNA Master → DNAMaster BLAST failure

Link to this post \| posted 12 May, 2018 12:07
Tamarah_Adair	Welkin Pope Hi Tammy, I have never seen that error before. I recommend trying a partial batch BLAST– 10 to 20 genes or so at a time, and then saving after each successful one. Good luck! Welkin Is anyone else having this problem? I tried several different sets of genes and even another genome and I keep getting this error. Did something change on the server settings? 38Kb

Posted in: DNA Master → DNAMaster BLAST failure

Link to this post \| posted 12 May, 2018 12:07
Tamarah_Adair	Welkin Pope Hi Tammy, I have never seen that error before. I recommend trying a partial batch BLAST– 10 to 20 genes or so at a time, and then saving after each successful one. Good luck! Welkin Is anyone else having this problem? I tried several different sets of genes and even another genome and I keep getting this error. Did something change on the server settings? 38Kb

Posted in: DNA Master → DNAMaster BLAST failure

Link to this post \| posted 11 May, 2018 16:30
Tamarah_Adair

Posted in: DNA Master → DNAMaster BLAST failure

Link to this post \| posted 11 May, 2018 13:42
Tamarah_Adair	And..I found the instructions in the new guide for BLASTING a subset. I'll try that.

Posted in: DNA Master → DNAMaster BLAST failure

Link to this post \| posted 11 May, 2018 13:36
Tamarah_Adair	Also, my previous question about entering the locus tags, was not about where to enter, but about adding the underscore. The underscore _ will not enter in the locus tag box, so it enters as SEAELESAR instead of SEA_ELESAR. Just checking the details…thanks.

Posted in: DNA Master → DNAMaster BLAST failure