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All posts created by Tamarah_Adair

| posted 29 Aug, 2017 15:21
Also, what is the plan for Windows 10?
Thanks!
Posted in: DNA MasterDNA Master Issue
| posted 29 Aug, 2017 15:18
I am having this issue also. It is returning tRNA calls, for example on Amigo, but no genes.
Help please.
Tammy
Posted in: DNA MasterDNA Master Issue
| posted 28 Apr, 2017 00:05
Thank you Keith and Chris. I feel like my students. I waited until the due date and now I have technical problems!
Posted in: DNA MasterRunning DNA Master on a Mac using Wine
| posted 26 Apr, 2017 22:42
OK. I'm going to try it again tonight on another non-campus computer.

https://baylor.box.com/s/d359kqad4rktrue2olj0sc6toa74csvy

Here is a link to the DNAMAster file.
I just tried to BLAST gene 1 and I got an OLE error.
Thanks,
Tammy
Posted in: DNA MasterRunning DNA Master on a Mac using Wine
| posted 26 Apr, 2017 22:09
Is anyone else having issues BLASTing in DNAMaster/Wine? I have not been able to get any BLAST results for 3 days. Either I get an OLE error or the BLAST fails or hangs up. I have tried single genes, entire genomes, and several different files.
I don't think anything has changed on my end, so I'm wondering if NCBI made any changes?
Posted in: DNA MasterRunning DNA Master on a Mac using Wine
| posted 18 Jan, 2017 17:22
All seems to be running now. I'll see how it goes in lab.
Thanks.
Edited 18 Jan, 2017 18:44
Posted in: DNA MasterDNAMaster in Wine slow or hung up
| posted 18 Jan, 2017 17:19
Thanks. We are having the same problem when we try it on Windows. Is there something I'm missing or are others experiencing this, too.
Posted in: DNA MasterDNAMaster in Wine slow or hung up
| posted 17 Jan, 2017 21:31
Today we tried to import our FASTA files and autoannotate. The majority of the students were able to accomplish this, although it took longer than usual. Several students and myself were never able to get the file to load. As I tried to recreate the problem with Jason K (our IT person) we have been hung up on the EXPORT. The Features table never fills.
We are working with the most recent update 12.3
We want to know
1. during this process is there interaction with servers (genemark? glimmer?) on the network or is this all local at this point?
2. If there is network interaction is there a way to generate a log or a trace file so we can see what is going on?

Thanks!
Tammy
Posted in: DNA MasterDNAMaster in Wine slow or hung up
| posted 29 Aug, 2016 18:15
Does anyone have experience mining metagenomic data for phage sequences? I have a colleague that studies the microbiome of stool samples. I am wondering how to find phage in the microbiome.
Posted in: Phage Biologyphage data in metagenome?
| posted 24 May, 2016 19:01
I am so sad to hear of this tragic accident. David was always willing to share and talk about science and I admired his enthusiasm and dedication to his students. Blessings and prayers for God's peace and comfort to all his friends and family.
Posted in: Messages for Cabrini CollegeMessages for Cabrini College