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Recent Activity

All posts created by sahas

Link to this post \| posted 25 Jan, 2022 19:41
sahas	Thank you!

Posted in: General Message Board → Electron Microscopy

Link to this post \| posted 25 Jan, 2022 15:20
sahas	Thank you so much, I will certainly explore this.

Posted in: General Message Board → Electron Microscopy

Link to this post \| posted 21 Jan, 2022 21:42
sahas	Hi I was wondering if anyone can recommend a place/lab to send our samples for electron microscopy? We haven't been successful in finding a resource yet. Any help will be highly appreciated. Thanks Sangha

Posted in: General Message Board → Electron Microscopy

Link to this post \| posted 25 Feb, 2021 16:08
sahas	I was having trouble with installing DNA Master and then came across these posts! I will follow your lead to get it back up and running. I had uninstalled it as I was not able to get any BLAST results.

Posted in: DNA Master → DNA master server down?

Link to this post \| posted 11 Apr, 2017 16:08
sahas	cdshaffer Purgamenstris is now an N cluster phage see: http://phagesdb.org/phages/Purgamenstris/ Sorry, it is indeed a Cluster N phage but is not in Phamerator

Posted in: Phamerator → Missing phage in Phamerator database

Link to this post \| posted 10 Apr, 2017 21:45
sahas	Hi I might have missed seeing this, but are some L4 phages like Purgamenstris missing from the database? Thanks Sangha

Posted in: Phamerator → Missing phage in Phamerator database

Link to this post \| posted 10 Apr, 2017 21:41
sahas	Hi I was checking a student's annotation for Bigswole, a C1 phage and noticed that it has a large number of tRNAS. However Among the tRNA genes, there is a long ORF OF 1253 bp (DNAM 273) , and one of 425 bp (DNAM 278 ) in between all of them. Is that valid? I am attaching the file here, which have a few genes that are annotated. Would appreciate some feedback. Thank you Sangha Edited 11 Apr, 2017 14:47 1.07Mb

Link to this post | posted 10 Apr, 2017 21:41

sahas

Hi
I was checking a student's annotation for Bigswole, a C1 phage and noticed that it has a large number of tRNAS. However Among the tRNA genes, there is a long ORF OF 1253 bp (DNAM 273) , and one of 425 bp (DNAM 278 ) in between all of them. Is that valid?

I am attaching the file here, which have a few genes that are annotated.
Would appreciate some feedback.
Thank you
Sangha

Edited 11 Apr, 2017 14:47

Posted in: Gene or not a Gene → C1 phage

Link to this post \| posted 29 Apr, 2016 00:55
sahas	Thank you so much Chris. Really appreciate it.I had started doubting myself whether I knew how to run starterator!

Posted in: Starterator → Read First: Common Starterator Troubleshooting

Link to this post \| posted 26 Apr, 2016 20:39
sahas	Hello Sorry to bother you again. I have been trying to run Starterator for Kerberos but it seems to stall after Pham 61. Can you please check? Many thanks Sangha

Posted in: Starterator → Read First: Common Starterator Troubleshooting

Link to this post \| posted 01 Apr, 2016 15:39
sahas	I had a similar problem that I got back only tRNA calls on Tuesday of this week.

Posted in: DNA Master → Glimmer Failure on Auto Annotation