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All posts created by sahas

| posted 25 Jan, 2022 19:41
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sahas
Thank you!
Posted in: General Message Board → Electron Microscopy
| posted 25 Jan, 2022 15:20
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sahas
Thank you so much, I will certainly explore this.
Posted in: General Message Board → Electron Microscopy
| posted 21 Jan, 2022 21:42
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sahas
Hi
I was wondering if anyone can recommend a place/lab to send our samples for electron microscopy? We haven't been successful in finding a resource yet.
Any help will be highly appreciated.
Thanks
Sangha
Posted in: General Message Board → Electron Microscopy
| posted 25 Feb, 2021 16:08
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sahas
I was having trouble with installing DNA Master and then came across these posts! I will follow your lead to get it back up and running. I had uninstalled it as I was not able to get any BLAST results.
Posted in: DNA Master → DNA master server down?
| posted 11 Apr, 2017 16:08
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sahas
cdshaffer
Purgamenstris is now an N cluster phage see:

http://phagesdb.org/phages/Purgamenstris/

Sorry, it is indeed a Cluster N phage but is not in Phamerator
Posted in: Phamerator → Missing phage in Phamerator database
| posted 10 Apr, 2017 21:45
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sahas
Hi
I might have missed seeing this, but are some L4 phages like Purgamenstris missing from the database?
Thanks
Sangha
Posted in: Phamerator → Missing phage in Phamerator database
| posted 10 Apr, 2017 21:41
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sahas
Hi
I was checking a student's annotation for Bigswole, a C1 phage and noticed that it has a large number of tRNAS. However Among the tRNA genes, there is a long ORF OF 1253 bp (DNAM 273) , and one of 425 bp (DNAM 278 ) in between all of them. Is that valid?

I am attaching the file here, which have a few genes that are annotated.
Would appreciate some feedback.
Thank you
Sangha
Edited 11 Apr, 2017 14:47
1.07Mb
Posted in: Gene or not a Gene → C1 phage
| posted 29 Apr, 2016 00:55
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sahas
Thank you so much Chris. Really appreciate it.I had started doubting myself whether I knew how to run starterator!
Posted in: Starterator → Read First: Common Starterator Troubleshooting
| posted 26 Apr, 2016 20:39
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sahas
Hello
Sorry to bother you again. I have been trying to run Starterator for Kerberos but it seems to stall after Pham 61.
Can you please check?
Many thanks
Sangha
Posted in: Starterator → Read First: Common Starterator Troubleshooting
| posted 01 Apr, 2016 15:39
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sahas
I had a similar problem that I got back only tRNA calls on Tuesday of this week.
Posted in: DNA Master → Glimmer Failure on Auto Annotation