SEA-PHAGES Logo

The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

Recent Activity

mkdennis posted in Lab coordinator position at Marist College

Kirk Anders posted in IrrE-like gene may have little coding potential

Kirk Anders posted in Right-most gene may be an HNH

Kirk Anders posted in Reverse gene between TACs and tape measure gene

Debbie Jacobs-Sera posted in anti-CBASS type III-C protein

All posts created by aajohnson

| posted 22 Feb, 2023 20:00
aajohnson avatar
aajohnson
debbie
Hi Kyle,
So if you continue to investigate, there is no supporting data for a minor tail protein except NCBI said so. there is no way that a functional call can be made from the blast data that HHPred data sources does not support."

We're getting no blastp CDD or HHPred support for at least two "minor tail proteins" in cluster K phages, including in the publication supplementary tables posted there. I would call them as hypothetical protein. I haven't dug yet for any synteny rules or something related to these- can you point me towards something to use?
I commiserate with you Kyle.
Posted in: Functional Annotation → RefSeq and INSDC name disagreements in NCBI Blast for Functonal Assignment
| posted 04 Feb, 2016 18:52
aajohnson avatar
aajohnson
I'm definitely interested. My student work on laptops, and we create a Windows VM for the students with Macs to run DNA Master but it's a hassle for a variety of reasons. I'd love it they only had one install.
Edited 04 Feb, 2016 18:52
Posted in: DNA Master → Running DNA Master on the Ubuntu SEA Virtual Machine