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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

2018 SEA-PHAGES Annual Letter

Below, find the first SEA-PHAGES Annual Letter, written in 2018 for the 2017-18 academic year. We hope to continue to write a summary of accomplishments, developments, and plans at the conclusion of each year.

Click here to download a pdf version of the letter.

Dear SEA-PHAGES Community,

The 2018 Symposium is a red-letter event, reflecting ...

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Oral presenters have been notified for 2018

Dear Faculty, Thank you for submitting your abstracts for the SEA Symposium. At this point, all oral presenters have been notified via email. We look forward to poster presentations from all submissions.

See you in a few weeks!

Best, The SEA-PHAGES TEAM

Genomes to move to Exchange June 15

This was sent as an email from info@seaphages.org to all faculty:

Dear Faculty, Thank you very much for the annotations you've submitted over the past few days. We appreciate the time that you are taking to bring your files up to the newest standards. This will make our review go much more ...

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Sequencing Status 2017-18

Below is a live spreadsheet showing the status of SEA-PHAGES sequencing samples for the 2017-18 academic year. Generally, only samples in the "priority" queue will be listed, and it may take a few days after receipt of samples for them to appear.

CLICK HERE to open this in a new browser window.

Official Function List

Embedded below is the list of approved functions and specific names for those functions. Any functional calls you make should come from this list and use the naming conventions here. If you think you've found a function not on this list, please request that it be added at the appropriate forum.

CLICK HERE to ...

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Auto-annotation Fix for DNA Master

Recently, NCBI changed accessibility to Glimmer and GeneMark servers. Upon update and a few key re-configurations, DNA Master can once again auto-annotate. Please follow the directions in the attached document to get auto-annotation working again. Yay!

How to update DNA Master to restore auto-annotation functionality

debbie

Regional Symposia

We're delighted that more and more SEA institutions are coming together to host regional SEA symposia. In 2016-2017, 5 regional symposia were held, attended by students and faculty from 17 SEA institutions. Regional symposia offer many benefits, including more opportunities for students and faculty to network, collaborate, and present their research. HHMI is pleased ...

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2018 Membership and Responsibilities

Dear SEA-PHAGES Faculty,

We’re looking forward to the coming academic year, and its culmination in what will be the 10th Annual SEA-PHAGES Symposium at Janelia Research Campus on June 8-10, 2018. We are pleased that the program continues to be adopted by a variety of different institutions. This fall, seventeen new schools joined up ...

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Annotation Forum Reorganization

An Inherent Problem with Annotation

With the constant influx of new software tools, new genomes, and new publications, the way we annotate genomes is always changing. We always know a bit more than we did last year, and often a lot more than we did 5 years ago.

This leads to an inherent problem, however ...

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Sequencing Status 2016-17

CLICK HERE to open this in a new browser window.

Yearly archives

Current Events

Receive, Prepare, and Test Biologicals for Phage Discovery **

April 1, 2019 to May 31, 2019

Upcoming Events

11th Annual SEA Symposium

June 7, 2019 to June 9, 2019

2019 Faculty Workshop

June 9, 2019 to June 12, 2019

Phage Discovery Workshop 12A

June 22, 2019 to June 28, 2019

Forum Activity

asprenkle posted in Pham not found in Starterator

Steven Caruso posted in Cluster BI - Endolysin

spaudel posted in the start of the integrase

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