The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

SEA Virtual Machine 2015

2015 VM Largely Unchanged

Because there were very few changes made in the 2015 version of the SEA Virtual Machine, we decided not to request that all schools replace their 2014 VMs with the 2015 one.  If you've got the 2014 VM installed, you'll have no trouble running Phamerator, AceUtil, Newbler, consed, etc., and do not need to update.

Starterator Added

We did, however, add one program called Starterator to the 2015 VM.  Starterator is a program that can help you make start-site choices during annotation by providing a pham-wide view of available and chosen start sites.  Thus, you can compare how one of your gene's start site possibilities compare to similar genes that have already been published.  Starterator was developed by Marissa Pacey at the University of Pittsburgh.

Download the VM

Keep in mind these are quite large files, and using a hard-wired connection will likely result in faster downloads.  The machine can then be copied to a flash drive and distributed as needed.

Click here for the version for Mac.

Click here for the version for PC.

Next entry:

Previous entry:

Related entries

comments powered by Disqus

Current Events

Virtual Site-Visit with SEA Team

September 1, 2019 to October 31, 2019

Upcoming Events

Identify Bioinformatics Workshop Trainees

October 2, 2019

Philly Phage Phestival 2019

November 16, 2019

Bioinformatics Workshop

December 9, 2019 to December 13, 2019

Recent Events

Phage Discovery Workshop 12B

July 7, 2019 to July 13, 2019

Phage Discovery Workshop Option B

July 6, 2019 to July 12, 2019

Forum Activity posted in Multiple ORFs in GeneMark posted in Multiple ORFs in GeneMark

Welkin Pope posted in Multiple ORFs in GeneMark