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All posts created by robert.logan

| posted 29 Jun, 2023 18:48
I confirm that this also occurs in the draft genome DejaVu (ED1) between the PECAAN called genes #51 and #52. Both of these genes encode for a tail assembly chaperone protein.
The genomic loci are CDS join (24677. .25339;25339. .2655smile
smile
Robert Logan, Ph.D.
Assistant Professor of Biology
Eastern Nazarene College, Quincy, MA 02170
Posted in: Cluster ED Annotation TipsFrame shift in cluster ED
| posted 03 Jun, 2023 15:48
I confirm that this also occurs in the draft genome ASegato (ED2) between the PECAAN called genes #47 and #48. Both of these genes encode for tail assembly chaperone proteins.
The genomic loci are CDS join (25411. .26006;26006. .26558 )
Robert Logan, Ph.D.
Assistant Professor of Biology
Eastern Nazarene College, Quincy, MA 02170
Edited 05 Jun, 2023 00:51
Posted in: Cluster ED Annotation TipsFrame shift in cluster ED
| posted 29 Jan, 2023 22:06
debbie
Hi Robert,
Please check you DNA master preferences and make sure you follow #2 and #6 correctly.
https://seaphagesbioinformatics.helpdocsonline.com/article-66

Hi Debbie, That worked beautifully. Thank you!
Robert Logan, Ph.D.
Assistant Professor of Biology
Eastern Nazarene College, Quincy, MA 02170
Posted in: DNA MasterGlimmer failure during autoannotation
| posted 29 Jan, 2023 21:36
I also get a Glimmer failure error when trying to auto-annotate.
Robert Logan, Ph.D.
Assistant Professor of Biology
Eastern Nazarene College, Quincy, MA 02170
Posted in: DNA MasterGlimmer failure during autoannotation