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Recent Activity
All posts created by kcornely
| Link to this post | posted 28 Jan, 2019 22:15 | |
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Thanks for your suggestion about the profile, Chris! And I did see that all of the starterator genes were on line. But I wanted a full report so that I could upload it to PECAAN. And once I looked up how to upload the database, Starterator worked fine. Thanks again! |
Posted in: Starterator → phage that crash starterator
| Link to this post | posted 27 Jan, 2019 22:50 | |
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Hello all! This looks like an old thread, but I'm having trouble with Starterator so this seems to be a good location to post. I'm trying to run Starterator on Skippy, and I selected "Whole Phameratated Phage" and was told that Skippy was not in the database. I know that there is a way to update the database, but I can't remember how, so I chose "Unphamerated Phage" instead and uploaded the FastA file. Starterator appeared to start, but then crashed and I was told to "Please try again" which I did, but it crashed again. Thanks in advance for any help you can provide! |
Posted in: Starterator → phage that crash starterator
| Link to this post | posted 08 May, 2017 21:52 | |
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Thank you so much, Chris! Sorry to take you away from your grading. We are used to using the standard format,so what you have provided is fine. Thanks again and good luck with finals! |
Posted in: Starterator → phage that crash starterator
| Link to this post | posted 08 May, 2017 20:00 | |
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Thank you so much, Chris! Sorry to tear you away from your grading. We are used to the standard format, so what you have provided is fine. Thanks again and good luck with the end of the semester! |
Posted in: Starterator → phage that crash starterator
| Link to this post | posted 04 May, 2017 22:37 | |
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Thank you for all of your suggestions! We're on the current database (for both Phamerator and Starterator) and we've deleted all of the intermediate files. We are working on DismalFunk and Starterator works great until it gets to pham 85 (out of 95), and then it crashes. Any help would be greatly appreciated and thanks! Kathleen |
Posted in: Starterator → phage that crash starterator
| Link to this post | posted 25 May, 2016 17:23 | |
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I too was saddened by this tragic news. I so enjoyed seeing David at SEA gatherings because of his enthusiasm for science, his warmth and good humor and his generosity of spirit. He will be greatly missed. My sincerest condolences to his family and his many friends and colleagues. |
Posted in: Messages for Cabrini College → Messages for Cabrini College