Link to this post | posted 25 Sep, 2016 21:00

jparker

Hey Steve! I don't know if this is an isolated issue, but the Map/Samples feature does not appear to be working at all times. On Friday, nothing happened when I tapped on the Map icon (screen stayed white). But it works today! Any suggestions? Also, I would love to see a feature there we could see where samples had already been collected that resulted in phage, so my students are not sampling the same planter every single quarter! Thanks, Jordan

Link to this post | posted 19 Sep, 2016 20:18

jparker

Thanks Chris! It looks like I accidentally deleted something important… Unless you have a quick fix, it might be easiest for me to download and reinstall the VM, then starterator beta. Thanks for the starterator output data! seastudent@SEA2016:~$ /home/seastudent/Application/Starterator/starterator/sharterator.sh bash: /home/seastudent/Application/Starterator/starterator/sharterator.sh: No such file or directory best, jordan

Link to this post | posted 17 Sep, 2016 21:18

jparker

Hi Chris, Somehow I have completely bricked Starterator. The student version gives me an error "Startstaerator has encountered an error. Please try again." Yes it says "Startstaerator". The Faculty version, where I installed the v1.1.1 now does not even have a responsive icon, just a blank white icon, and nothing happens when clicked on. I tried to start from scratch and install in the Admin version, and same as above. Help! Jordan 229Kb

Link to this post | posted 05 Aug, 2016 01:39
jparker	Reinstalling the beta version worked. Thanks Chris!

Link to this post | posted 05 Aug, 2016 01:08
jparker	I tried the things that Lee tried, as well. Had connectivity and restarted the VM. I use VMware Fusion, though. Does that make a difference? Jordan

Link to this post | posted 04 Aug, 2016 05:37
jparker	Hi Chris, My Startator beta does not seem to be automatically downloading the 1.1.1 automatic update. Is there a force update option? Thanks, Jordan

Link to this post | posted 24 Feb, 2016 03:24
jparker	jparker Hello, We are trying to BLAST in DNAM and are getting an "Integer Overflow" error message. This is a new one for us. Any thoughts? This was from trying to BLAST a single gene at 7pm PST, so shouldn't be PEAK hours. Thanks, Jordan Then we got this: Sending BLAST request… Waiting 74278080 seconds as requested…

Link to this post | posted 24 Feb, 2016 03:20
jparker	Hello, We are trying to BLAST in DNAM and are getting an "Integer Overflow" error message. This is a new one for us. Any thoughts? This was from trying to BLAST a single gene at 7pm PST, so shouldn't be PEAK hours. Thanks, Jordan

Link to this post | posted 24 Feb, 2016 03:14
jparker	Hello, When we are compiling our final minimal annotation files for submission, should we leave the notes section for genes with no known function blank, or should we put "NKF"? Thanks! Jordan

Link to this post | posted 07 Dec, 2015 16:05
jparker	Eureka! Exactly what I need. I have never seen that page. What menu is it under? I can't seem to be find a link for it on PhagesDB. Now that I know it exists, i'll bookmark it, but it would be good to know how to direct students to the page. Thanks! Jordan