SEA-PHAGES | All posts created by jmclean2@sunyrockland.edu

Link to this post \| posted 20 Sep, 2022 15:44
jmclean2@sunyrockland.edu	I had a student try to use M marinum just before COVID and we found we were unable to infect with any of our stock phages and found no environmental samples that could do the trick either. Looking deeper into the published research, marinum already has several (up to 10?) prophages that appear to be causing superinfection immunity. Eventually we canned the project as several months in, we got nothing to happen in the phage dept.

Link to this post | posted 20 Sep, 2022 15:44

I had a student try to use M marinum just before COVID and we found we were unable to infect with any of our stock phages and found no environmental samples that could do the trick either. Looking deeper into the published research, marinum already has several (up to 10?) prophages that appear to be causing superinfection immunity. Eventually we canned the project as several months in, we got nothing to happen in the phage dept.

Posted in: Mycobacterium → Mycobacterium Marinum

Link to this post \| posted 06 May, 2019 20:54
jmclean2@sunyrockland.edu	This is all a tremendous help. Thank you very much for everything!! Jeff

Posted in: DNA Master → DNA Master Note Parsing Bugs

Link to this post \| posted 28 Apr, 2019 17:52
jmclean2@sunyrockland.edu	Just tried with a different phage (Phaded) and all worked well with the export of full annotation from PECAAN to DNA Master, tried dieselweasel again and same truncation as before. i'm at a loss….any information greatly appreciated! Jeff

Posted in: DNA Master → DNA Master Note Parsing Bugs

Link to this post \| posted 28 Apr, 2019 16:13
jmclean2@sunyrockland.edu	I am having this issue importing full annotations of phage Dieselweasel to DNA Master from PECAAN. I have tried to replace all quotes as described in Claire's post, I have tried cutting and pasting the notes in pieces, I have tried creating several DNA Master files each containing chunks of the notes and merging them. Regardless of technique DNA Master will only paste in the first 33 genes into the documentation. Functions-only export from PECAAN to DNA master works just fine. Help? Thanks, Jeff

Link to this post | posted 28 Apr, 2019 16:13

jmclean2@sunyrockland.edu

I am having this issue importing full annotations of phage Dieselweasel to DNA Master from PECAAN. I have tried to replace all quotes as described in Claire's post, I have tried cutting and pasting the notes in pieces, I have tried creating several DNA Master files each containing chunks of the notes and merging them. Regardless of technique DNA Master will only paste in the first 33 genes into the documentation. Functions-only export from PECAAN to DNA master works just fine.
Help?
Thanks,
Jeff

Posted in: DNA Master → DNA Master Note Parsing Bugs

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