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Recent Activity
All posts created by DrCatalase
Link to this post | posted 06 Mar, 2023 19:13 | |
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debbie Thank you. I was confused when I compared it to the capsid maturation protease amino acid sequence from Langerak_gp4 (from the official function list) and got no significant alignment, so it worried me. Sean |
Posted in: Cluster EA Annotation Tips → EA4 gene 4
Link to this post | posted 06 Mar, 2023 17:22 | |
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DrCatalaseI didn't see any similarity by amino acid comparison with the reference minor capsid protein and capsid maturation protease gene products. |
Posted in: Cluster EA Annotation Tips → EA4 gene 4
Link to this post | posted 06 Mar, 2023 16:57 | |
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We are looking at two EA4 phages that have what is called by others as a MuF-like minor capsid protein, minor capsid protein, capsid maturation protease, or a hypothetical protein. We are looking for some guidance, but right now, I am leaning toward hypothetical protein. |
Posted in: Cluster EA Annotation Tips → EA4 gene 4
Link to this post | posted 22 Sep, 2022 13:54 | |
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After the breakout room, Vic shared a pro-tip before we left: grass clippings, particularly partially decaying grass clippings, may be an excellent source of M. foliorum phages. I'm looking forward to trying this. Also, I am 100% from compost on Microbacterium foliorum bacteriophages, by direct isolation. Especially good is vermicompost! |
Posted in: Microbacterium → Notes from September 2022 Faculty Meeting
Link to this post | posted 18 May, 2022 21:32 | |
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scresawn Thank you, Steve! SC |
Posted in: Phamerator → Phamerator down?
Link to this post | posted 18 May, 2022 13:20 | |
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debbie Thank you, I had assumed it was something on my end. Sean |
Posted in: Phamerator → Phamerator down?
Link to this post | posted 18 May, 2022 13:16 | |
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Hello all, I cannot access phamerator I was able to the day on Monday but not yesterday or today. I have tried with wifi and ethernet on my computer and wifi and data on my phone. I get this message… phamerator.org took too long to respond. Try: Checking the connection Checking the proxy and the firewall Running Windows Network Diagnostics ERR_CONNECTION_TIMED_OUT Someone, please help I am trying to finish up an already late annotation (lol, sorry) Thank you, Sean |
Posted in: Phamerator → Phamerator down?
Link to this post | posted 17 Dec, 2020 15:12 | |
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debbieThank you. |
Posted in: Notes and Final Files → Filling in the Product field
Link to this post | posted 16 Dec, 2020 22:02 | |
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Is it okay to have "hypothetical protein" in the function field of your your complete notes file? Thank you. |
Posted in: Notes and Final Files → Filling in the Product field
Link to this post | posted 15 Dec, 2020 22:01 | |
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cdshaffer Thank you, Chris! |