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uOttawaPHAGE posted in Fin anti-sigmaF factor
Debbie Jacobs-Sera posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
nic.vega posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
Debbie Jacobs-Sera posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
nic.vega posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
Ead/Ea22-like protein
| Link to this post | posted 02 Jun, 2017 20:58 | |
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I have a cluster A1 phage (Smairt) with an ORF with nice blastp and HHPred matches (98% probability, 70% coverage) to Ead/Ea22-like protein. Call function? |
| Link to this post | posted 06 Jun, 2017 12:59 | |
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I don't know what an Ead/Ead22 -like protein is. Can you elaborate? Does it make sense in the context of phage biology? |
| Link to this post | posted 06 Jun, 2017 15:38 | |
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From HHPred (as well as Interpro, pfam, … Ead/Ea22-like proteinThis family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein. A quick Google search does not find more information than this… I'm happy to just say NKF |
| Link to this post | posted 08 Jun, 2017 15:27 | |
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I agree! Stick to NKF. |