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Adding Illumina reads

| posted 07 Nov, 2015 21:08
I have tried to add Illumina reads to an assembly using "addSolexaReads.perl" and following Dan's instructions. However I keep getting the following error "-ace must be specified". Everything looks correct to me with the command and filenames.

Any suggestions?

Lee
| posted 08 Nov, 2015 03:03
Figured it out! I was using the old form, not the newer form of the command (forgot to read the comments at the bottom of the video).
| posted 10 Nov, 2015 18:30
Yep, you got it Lee. I made the original video with an older version of consed. The new syntax should be:

addSolexaReads.perl -ace your_ace_file.ace -fastqfof reads_file.fof -fasta fasta_file.fof

–Dan
Edited 10 Nov, 2015 18:31
 
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