SEA-PHAGES Sections
BIO1027LA Principles I Lab
Primary Instructor: Janine LeBlanc-Straceski
Additional Instructor: Janine LeBlanc-Straceski
Type: In situ (phage discovery/microbiology)
Hosts used: Mycobacterium smegmatis
Number of students: 13
Freshmen: 9
Sophomores: 3
Juniors: 1
Meetings per week: 1
Hours per week: 3.0
Students come in at other times to check results, perform segments of protocols. This course is limited to biology majors taking the introductory Principles I course. They are mostly freshmen.
BIO1027LB Principles I Lab
Primary Instructor: Janine LeBlanc-Straceski
Additional Instructor: Janine LeBlanc-Straceski
Type: In situ (phage discovery/microbiology)
Hosts used: No host information yet.
Number of students: 14
Freshmen: 12
Sophomores: 2
Meetings per week: 1
Hours per week: 3.0
Students come in at other times to check results, perform segments of protocols. This course is limited to biology majors taking the introductory Principles I course. They are mostly freshmen.
BIO1027LC
Primary Instructor: Janine LeBlanc-Straceski
Type: In situ (phage discovery/microbiology)
Hosts used: Mycobacterium smegmatis
Number of students: 12
Freshmen: 10
Sophomores: 2
Meetings per week: 1
Hours per week: 2.0
BIO1027LC Principles I Lab
Primary Instructor: Janine LeBlanc-Straceski
Additional Instructor: Janine LeBlanc-Straceski
Type: In situ (phage discovery/microbiology)
Hosts used: Mycobacterium smegmatis
Number of students: 17
Freshmen: 17
Meetings per week: 1
Hours per week: 3.0
Students come in at other times to check results, perform segments of protocols. This course is limited to biology majors taking the introductory Principles I course. They are mostly freshmen.
BIO1027LE
Primary Instructor: Janine LeBlanc-Straceski
Type: In situ (phage discovery/microbiology)
Hosts used: Mycobacterium smegmatis
Number of students: 6
Freshmen: 6
Meetings per week: 1
Hours per week: 2.0
BIO1027LG Principles I
Primary Instructor: Janine LeBlanc-Straceski
Type: In situ (phage discovery/microbiology)
Hosts used: Mycobacterium smegmatis
Number of students: 13
Freshmen: 13
Meetings per week: 1
Hours per week: 3.0
BIO2018L-A
Primary Instructor: Seung-Hwan Kim
Additional Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 14
Meetings per week: 1
Hours per week: 3.0
Shygu2 annotation
BIO2018L-A
Primary Instructor: Janine LeBlanc-Straceski
Additional Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 16
Sophomores: 2
Juniors: 9
Seniors: 4
Meetings per week: 1
Hours per week: 3.0
The annotation will take place over three meetings, with students working independently in between. LeBlanc and a smaller group of students will do the QC and any tricky parts of the annotation, e.g. the translational frameshifts. We will be using PECAAN.
BIO2018L-A
Primary Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 14
Sophomores: 12
Juniors: 1
Seniors: 1
Meetings per week: 1
Hours per week: 2.5
Adopted and annotated MinionDave
BIO2018L-A
Primary Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: No host information yet.
Number of students: 15
Freshmen: 1
Sophomores: 5
Juniors: 5
Seniors: 4
Meetings per week: 1
Hours per week: 3.0
BIO2018L-A
Primary Instructor: Janine LeBlanc-Straceski
Additional Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 12
Sophomores: 7
Juniors: 5
Meetings per week: 1
Hours per week: 3.0
Annotation of BlackBeetle
BIO2018L-B
Primary Instructor: Charlotte Berkes
Additional Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 14
Meetings per week: 1
Hours per week: 3.0
Austelle annotation
BIO2018L-C
Primary Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 14
Meetings per week: 1
Hours per week: 3.0
Shygu2 annotation
BIO2018L-C
Primary Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 14
Sophomores: 12
Juniors: 1
Seniors: 1
Meetings per week: 1
Hours per week: 2.5
Adopted and annotated MinionDave
BIO2018L-D
Primary Instructor: Seung-Hwan Kim
Additional Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 14
Meetings per week: 1
Hours per week: 3.0
BIO2018L-D
Primary Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 15
Sophomores: 6
Juniors: 5
Seniors: 4
Meetings per week: 1
Hours per week: 3.0
BIO2018LA
Primary Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 16
Sophomores: 10
Juniors: 4
Seniors: 2
Meetings per week: 1
Hours per week: 3.0
BobSwaget genome annotation.
BIO2018LA-D Genetics Lab
Primary Instructor: Janine LeBlanc-Straceski
Additional Instructor: Charlotte Berkes
Additional Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 64
Freshmen: 1
Sophomores: 17
Juniors: 28
Seniors: 18
Meetings per week: 1
Hours per week: 2.5
BIO2018LB
Primary Instructor: Janine LeBlanc-Straceski
Type: In silico (phage genomics/bioinformatics)
Hosts used: Mycobacterium smegmatis
Number of students: 19
Sophomores: 7
Juniors: 7
Seniors: 5
Meetings per week: 1
Hours per week: 3.0
Lokk annotation.