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Recent Activity
Debbie Jacobs-Sera posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
nic.vega posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
Debbie Jacobs-Sera posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
nic.vega posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
All posts created by sheninger
| Link to this post | posted 27 Mar, 2025 00:28 | |
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Can the people who run Pecaan be contacted to remove NKF from their list of accepted functions? It may save the reviewer headaches in getting them all changed over. (old habits die hard, I liked NKF) |
Posted in: Functional Annotation → hypothetical or NKF
| Link to this post | posted 26 Mar, 2025 01:59 | |
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Pecaan currently accepts both NKF and hypothetical Protein. So should we change all to hypothetical protein? |
Posted in: Functional Annotation → hypothetical or NKF
| Link to this post | posted 31 Oct, 2022 03:17 | |
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In reviewing function calls, looking at gene in Pham 657. Our gene AranulaLuti_draft 48, has about ten 100% BLAST matches. For these perfact matches, there are three different function calls, AAA ATPase, thymidylate kinase and NKF. Majority of the Blast matches are AAA ATPase, HHpred matches well with thymidylate. And to add to the confusion, one of the 100% Blast matches, Ilzat_46, function was AAA ATPase in May 2019,but was changed to NKF in Dec 2020. I'm stumped, any insight? |
| Link to this post | posted 25 Jan, 2021 02:44 | |
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We just got assigned a phage to annotate, Dignity. When I went to look for it in PECAAN I could not find it. What can I do to get access it? Does it have to be assigned to our school to access it or something like that? |
Posted in: Bioinformatic Tools and Analyses → PECAAN