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All posts created by rlb6

Link to this post \| posted 09 Apr, 2018 14:24
rlb6	Although the group annotating the Bibwit genome has not seen other supporting data, there is synteny with the tail assembly chaperones (genes 31 and 32) annotated in Gordonia phage Sitar. I do not see that a frameshift has been identified for Sitar_32. Should we propose a frameshift or hold off and wait for other evidence that may be pending for Sitar? Beckie Bortz Edited 25 Apr, 2018 22:11 381Kb

Link to this post | posted 09 Apr, 2018 14:24

rlb6

Although the group annotating the Bibwit genome has not seen other supporting data, there is synteny with the tail assembly chaperones (genes 31 and 32) annotated in Gordonia phage Sitar. I do not see that a frameshift has been identified for Sitar_32. Should we propose a frameshift or hold off and wait for other evidence that may be pending for Sitar?

Beckie Bortz

Edited 25 Apr, 2018 22:11

Posted in: Cluster DE Annotation Tips → Tail assembly chaperones

Link to this post \| posted 04 Oct, 2017 14:17
rlb6	Kiko_draft_36 BLAST data (attached) shows strong hits to FIC family protein in many bacteria. HHpred also hits FIC protein/domain as well as many other things (attached). What do you think is the appropriate functional call? I have also attached the product sequence if you want to take it to HHpred yourself to see the full data. Beckie Bortz Edited 04 Oct, 2017 14:22 480Kb 240Kb 47Kb

Posted in: Functional Annotation → transcriptional regulator or toxin-antitoxin