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Recent Activity
All posts created by lisabono
| Link to this post | posted 21 Jan, 2026 18:10 | |
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Thanks, Lee and the other folks in this thread, for the very helpful info. After having an especially difficult time with DNA Master this semester, we're trying to figure how to minimize using the program in the classroom. Our understanding is that DNA Master has frames view, which is how we access the
Is there another method for getting this info? Thanks so much your insights! Lisa and Allie |
Posted in: PECAAN → Teaching with PECAAN
| Link to this post | posted 26 Feb, 2025 18:15 | |
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Our section of SEA-PHAGES is annotating PrairieDogTown in Cluster FO. We noticed that PrairieDogTown (FO) has 82 predicted features, while the rest of the phages in FO has 52-54 features. When we dug into this a bit, we realized that the discrepancy in the number of features appears to be a difference in the number of reverses. PrairieDogTown has ~27 reverse genes while JanetJ and Aoka have 3-5. The rest of the phage in the cluster are still draft genomes. Anyone have any ideas about why we would be seeing such a large discrepancy in the number of reverses? Is there a technical reason why more reverses would be detected? Thanks! Note that there's no Cluster FO specific topic, so I'm posting in F. |