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cdshaffer posted in Whole phage starterator reports
fbaliraine posted in Phage DoRead Start at 52714 bp with 8 bp overlap vs start at 52718 with 4 bp overlap?
Debbie Jacobs-Sera posted in Phage DoRead Start at 52714 bp with 8 bp overlap vs start at 52718 with 4 bp overlap?
All posts created by lisabono
| Link to this post | posted 26 Feb, 2025 18:15 | |
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Our section of SEA-PHAGES is annotating PrairieDogTown in Cluster FO. We noticed that PrairieDogTown (FO) has 82 predicted features, while the rest of the phages in FO has 52-54 features. When we dug into this a bit, we realized that the discrepancy in the number of features appears to be a difference in the number of reverses. PrairieDogTown has ~27 reverse genes while JanetJ and Aoka have 3-5. The rest of the phage in the cluster are still draft genomes. Anyone have any ideas about why we would be seeing such a large discrepancy in the number of reverses? Is there a technical reason why more reverses would be detected? Thanks! Note that there's no Cluster FO specific topic, so I'm posting in F. |