SEA-PHAGES Logo

The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

Recent Activity

Debbie Jacobs-Sera posted in Potential minor tail proteins in cluster GK

adiaz posted in Potential minor tail proteins in cluster GK

Debbie Jacobs-Sera posted in new HHPred hit to PDB 8JOU - Fiber I & fiber-tail-adaptor

c.sunnen posted in new HHPred hit to PDB 8JOU - Fiber I & fiber-tail-adaptor

cdshaffer posted in Whole phage starterator reports

All posts created by byrumc@cofc.edu

| posted 11 Sep, 2019 14:55
default avatar
byrumc@cofc.edu
Hi Welkin,
We're looking at LastJedi. I've attached the GeneMark(smog) output. Thanks!
Christine
178Kb
Posted in: Gene or not a Gene → Multiple ORFs in GeneMark
| posted 11 Sep, 2019 13:45
default avatar
byrumc@cofc.edu
My class is currently annotating an adopted genome and when I produced the GeneMark(smeg)file, I noticed that many of the genes have ORFs in alternate reading frames. This happens 36 times in a genome with 90 genes. We're annotating the genes that have been called in these cases, but it seems much more common than in previous genomes that I've annotated. Should I be concerned?
Posted in: Gene or not a Gene → Multiple ORFs in GeneMark