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All posts created by QUPhage

Link to this post \| posted 08 Feb, 2018 18:33
QUPhage	Hi Veronique, Quick question regarding points one and two. Our phage's gene 9 function would not qualify for option two. Blast functions are listing either head-to-tail connector proteins or NKF. When checking HHpred Head-to-tail connector is called with Pfam, but not PDB. The other HHpred functions don't correspond to the blast results. Phamerator also shows 100% alignment with a head-to-tail connector protein. In this situation do we assign NKF even though we have ample support in assigning head-to-tail connector function.

Link to this post | posted 08 Feb, 2018 18:33

QUPhage

Hi Veronique,

Quick question regarding points one and two. Our phage's gene 9 function would not qualify for option two. Blast functions are listing either head-to-tail connector proteins or NKF. When checking HHpred Head-to-tail connector is called with Pfam, but not PDB. The other HHpred functions don't correspond to the blast results. Phamerator also shows 100% alignment with a head-to-tail connector protein. In this situation do we assign NKF even though we have ample support in assigning head-to-tail connector function.

Posted in: Functional Annotation → Head-tail connectors