This question actually relates to all SIF documentation, not just HHPred. Let's say you have good evidence that something is a capsid maturation protease, but you don't get a good HHPred hit. And based on all of the evidence you have, you call it a "capsid maturation protease", how do you then document the SIF-HHPred information?

Would it be:
SIF-HHPred: NKF - No matches with other 90% probability
SIF-HHPred: No matches with other 90% probability
SIF-HHPred: capsid maturation protease - No matches with other 90% probability

I guess my more general question is with SIF, even if the piece of information doesn't support your call, how to you list it.

Thanks!
Ellen