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All posts created by CCSNH-NHTI

| posted 07 Sep, 2023 21:20
OK, thanks.
Posted in: Cluster AZ Annotation TipsReference genomes for AZ phages
| posted 07 Sep, 2023 19:01
Thanks for all that work. We are writing up the MRA for MaGuCo that was placed in subcluster AZ2 during this process. If we wanted to mention this fact in the announcement, do you have any documentation produced yet that explains the changes?
Thanks,
Posted in: Cluster AZ Annotation TipsReference genomes for AZ phages
| posted 07 Sep, 2023 19:01
Thanks for all that work. We are writing up the MRA for MaGuCo that was placed in subcluster AZ2 during this process. If we wanted to mention this fact in the announcement, do you have any documentation produced yet that explains the changes?
Thanks,
Posted in: Cluster AZ Annotation TipsReference genomes for AZ phages
| posted 03 Jun, 2023 16:11
All AS phages found so far have a tail assembly chaperone preceding the tape measure protein with a programmed translational frameshift. The tail assembly chaperone is typically found in the left arm of the genome around gp13-15. It is a -1 frameshift: G_GG.G_GA.A
Posted in: Cluster AS Annotation TipsTail Assembly Chaperone- Translational Frameshift
| posted 06 Sep, 2022 22:18
And it seems OK at 6 pm…. false alarm!
Posted in: DNA MasterGlimmer failure during autoannotation
| posted 06 Sep, 2022 20:18
I am getting the same Glimmer failure error today during autoannotation: 9/6/22, 4:15 pm, build 2705
Posted in: DNA MasterGlimmer failure during autoannotation
| posted 31 Aug, 2021 11:59
Kristen, I had just found your thread yesterday. Thank you both.
Posted in: DNA MasterDNA Master Issue
| posted 25 Aug, 2021 12:41
Hi. I'm getting a Blast error: "Error sending requests to QBlast server". The one thing I see in Preferences that the Guide doesn't specify is on the Secure Connections page, I have drop down boxes next to what is checked and it is defaulted to TLS 1.2. Should it be SSL 2 or 3 instead? Or any other suggestions are very welcome.
Thanks
Posted in: DNA MasterDNAMaster BLAST failure
| posted 20 Aug, 2021 16:14
OK, glad I am doing this before classes start! So IT followed the FTP protocol, reinstalled. Those features seem to be back in Preferences but the "FTP failure" message does pop up upon opening. The IT guy says the only one that works without error messages on my computer is the 2015 version- but I think that was the one missing preferences. So I assume you are not going to say I can ignore the message? And if not, would you/anyone else know what else to try?
Thanks for your time by the way!
Beth
Posted in: DNA MasterDNA Master Issue
| posted 20 Aug, 2021 15:16
IT won't give me admin rights so I'll have them come back. I did just see an "FTP failure" message when I hit Begin, did not see that earlier today. I saw a forum post re: FTP messages- is that what I should follow if the admin update does not work?
Beth
Posted in: DNA MasterDNA Master Issue