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Debbie Jacobs-Sera posted in Help with Annotating Direct Terminal Repeats
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Marie Fogarty posted in Help with Annotating Direct Terminal Repeats
Debbie Jacobs-Sera posted in Potential minor tail proteins in cluster GK
Intein in the terminase
Link to this post | posted 11 Jun, 2023 22:20 | |
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Some Cluster B3 and B4 phages have an intein in the middle of their terminase gene. To learn about inteins see this paper: Kelley DS, Lennon CW; SEA-PHAGES; Belfort M, Novikova O. Mycobacteriophages as Incubators for Intein Dissemination and Evolution. mBio. 2016 Oct 4;7(5):e01537-16. doi: 10.1128/mBio.01537-16. PMID: 27703073; PMCID: PMC5050341. To visualize an example of terminase with or without an intein, create a phamerator map with phage Kronus and Casbah (both B3). Note that presence of an intern may lead to identical proteins being assigned to different phams. |