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Recent Activity
Viknesh Sivanathan posted in Phage Staining - Uranyl Acetate
nietof posted in ParB-like nuclease domain
Jeremy Garza posted in Phage Staining - Uranyl Acetate
Debbie Jacobs-Sera posted in Help with Annotating Direct Terminal Repeats
Marie Fogarty posted in Help with Annotating Direct Terminal Repeats
Baseplate protein
| Link to this post | posted 20 Dec, 2022 18:17 | |
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Hello, I am annotating phage Emotion (AZ). The gene at stop 12160 (Emotion_draft_16) has some pretty good hits in HHpred to entries that mention baseplate, but I'm not sure if they are sufficient to call anything related to a baseplate. None of the hits mention anything specifically about baseplate J or baseplate wedge, the two currently approved functions. But the hits were strong enough, and apppeared to cover enough of the sequence from Emotion, that I am curious. I've summarized the data I found in the attachment and also copied some key info below. Any advice on this one? Emotion_draft_16: MAEGDFDLNGYKMGLGYDVVVESFDPGSAEWITQDAVAPVGGRRNFGADYASGPTWVLDLATDTHDAASARAALAGAARAWRPSGLATPGYEAILKYTIGGETRRVYGRPRKFAPIANGVSASGVMLATAEFVTSEAFTHAEEARSLTVGLVPVESGGFTSPLISPITTVAGSQRQGLIDDVGGDAPAPMTITIQGPVSGPKVSSSGWYFSLPSLSLAYDQSVTIDTRKGTVRRNDGANLGGLLSRGSTRLVDARLKTGAVEFIYSGTDQTATSTATVTWRPTYHAL PhagesDB for gene Emotion_draft_16: https://phagesdb.org/genes/Emotion_CDS_16/ HHpred results: https://toolkit.tuebingen.mpg.de/jobs/Emotion_16 |
139Kb| Link to this post | posted 21 Dec, 2022 11:30 | |
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I would keep this simple and call this a minor tail protein. |
| Link to this post | posted 21 Dec, 2022 18:08 | |
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Thank you Debbie! |