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Recent Activity
Debbie Jacobs-Sera posted in Help with Annotating Direct Terminal Repeats
Marie Fogarty posted in Help with Annotating Direct Terminal Repeats
cdshaffer posted in Help with Annotating Direct Terminal Repeats
Marie Fogarty posted in Help with Annotating Direct Terminal Repeats
Debbie Jacobs-Sera posted in Potential minor tail proteins in cluster GK
AV gene overlap
| Link to this post | posted 05 Apr, 2021 21:44 | |
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We are curious about the overlapping genes called in the AV cluster, such as Nellie 29/30 and Jasmine 32/33. Is there any information on this type of overlap being found in other phages or something else I am missing out on here? Thanks. |
| Link to this post | posted 06 Apr, 2021 00:26 | |
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Hi Tammy, It is not a common occurrence, for sure. In this case (and I used Nellie), the coding potential for gene 30 is best, so I want to call that one for sure. However, the HHPred for 29 is compelling (I would call it a WhiB, I think.) so I really want to call it. Because their direction has them running into each other, there is really no reason that they couldn't both be transcribed. debbie |
| Link to this post | posted 07 Apr, 2021 19:46 | |
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OK. Thanks. |
| Link to this post | posted 07 Apr, 2021 19:46 | |
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OK. Thanks. |