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Debbie Jacobs-Sera posted in Help with Annotating Direct Terminal Repeats
Marie Fogarty posted in Help with Annotating Direct Terminal Repeats
cdshaffer posted in Help with Annotating Direct Terminal Repeats
Marie Fogarty posted in Help with Annotating Direct Terminal Repeats
Debbie Jacobs-Sera posted in Potential minor tail proteins in cluster GK
New DNA Master Genome Profile Column and Starterator 1.2
| Link to this post | posted 04 Dec, 2020 17:55 | |
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Hi all- I recently discovered that DNA Master (version 5.23.6 updated 8 Nov 2020) is adding in an extra column into the basic Genome Profile called "Arm." It shows up in my files as Column E, in between Strand and Feature_Start. If you are trying to run Starterator 1.2 on a Whole Unphamerated Phage for QC purposes and do not delete this "Arm" column from the .csv Genome Profile, running Starterator 1.2 on the SEA VM fails and dumps out a blank report. Deleting the "Arm" column from the Genome Profile will enable you to successfully run a Starterator 1.2 report on a Whole Unphamerated Phage. I do not see a checkbox option on DNA Master to remove the "Arm" column from the Genome Profile output, so you will have to manually edit the csv output file. |
| Link to this post | posted 07 Dec, 2020 19:10 | |
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Thanks for posting this. I have added a note on the issues tracker for Starterator here: https://github.com/SEA-PHAGES/starterator/issues/42 Hopefully once the end of the semester grading bonanza ends I can update starterator to handle the new default Genome profile format created by DNA Master. |