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uOttawaPHAGE posted in Fin anti-sigmaF factor
Debbie Jacobs-Sera posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
nic.vega posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
Debbie Jacobs-Sera posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
nic.vega posted in Weird domain distribution over "cytosine methyltransferase" hits in an AS3 phage
K1 function call
Link to this post | posted 24 May, 2017 19:14 | |
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Hi all My students and I have been annotating a K1 phage and we have found some interesting HHPred matches. We are wondering whether these are sufficient to call funtion: Genes 39 and 40 - Both proteins show matches to ESAT6 family proteins - the first over only 20-25% of the aa sequence, the second over the whole aa sequence. Call function Virulence protein or NKF? Genes 94 and 95 - Nice HHPred matches - over 99%, whole length of aa sequence, very low E values -to HicB antitoxin and HicAtoxin - Call function? |
Link to this post | posted 24 May, 2017 20:17 | |
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Hi Veronique, Re the toxin/antitoxin the approved names are as follows: toxin in toxin/antitoxin system, HicA-like antitoxin in toxin/antitoxin system, HicB-like Best, Jackie |