Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.
Recent Activity
cdshaffer posted in Alphafold models of minor tail proteins
pchien posted in Alphafold models of minor tail proteins
pchien posted in Alphafold models of minor tail proteins
Debbie Jacobs-Sera posted in Adding genes in right arm of AS2 genomes
seaphages_usc posted in Adding genes in right arm of AS2 genomes
K1 function call
| Link to this post | posted 24 May, 2017 19:14 | |
|---|---|
|
Hi all My students and I have been annotating a K1 phage and we have found some interesting HHPred matches. We are wondering whether these are sufficient to call funtion: Genes 39 and 40 - Both proteins show matches to ESAT6 family proteins - the first over only 20-25% of the aa sequence, the second over the whole aa sequence. Call function Virulence protein or NKF? Genes 94 and 95 - Nice HHPred matches - over 99%, whole length of aa sequence, very low E values -to HicB antitoxin and HicAtoxin - Call function? |
| Link to this post | posted 24 May, 2017 20:17 | |
|---|---|
|
Hi Veronique, Re the toxin/antitoxin the approved names are as follows: toxin in toxin/antitoxin system, HicA-like antitoxin in toxin/antitoxin system, HicB-like Best, Jackie |