Assembling Reads with Newbler
A video tutorial about how to use 454's assembly program Newbler (aka GS De Novo Assembler) to assemble bacteriophage genomes that have been sequenced by 454, Illumina, or Ion Torrent technologies.
2:57 Usable file types
5:50 Assembling 454 reads (.sff)
8:37 Assembling Illumina reads (.fastq)
9:47 Newbler results/output
14:07 Ion torrent reads
16:27 Launching consed
Recorded and edited by Dan Russell.
Added: Oct 30, 2015
DNA Master: Database and Documentation: How to Post, Recreate, and Parse
Dr. Welkin Pope describes the underlying structure of a DNA Master file, including the Database and the Documentation. Included are host to Post (save changes to the database), Recreate (save changes to the Documentation), and Parse (populate the Database from the Documentation).
Recorded by and starring Welkin Pope. Edited by Dan Russell.
Added: Oct 27, 2015
DNA Master: How to Validate and Renumber Genes
Welkin clicks you through how to check that all of your genes are valid, as well as how you can renumber genes after adding or deleting genes has disrupted the order.
Recorded by and starring Welkin Pope. Edited by Dan Russell.
Added: Oct 23, 2015