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The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

SEA-PHAGES Videos
Channels
Tutorials (19 videos) Go to channel page
How-to videos that help with various parts of running or participating in a SEA-PHAGES course.
Subchannels
Assembly and QC (1 video) Go to channel page
Tutorials that demonstrate how to assemble and finish phage genomes after they've been sequenced.
Videos
Classroom Tools (1 video) Go to channel page
Tutorials for various tools that can be used in a SEA-PHAGES classroom.
Videos
Genome Announcements (1 video) Go to channel page
Tutorials designed to help write high-quality papers for the journal Genome Announcements.
Videos
2015 Symposium (20 videos) Go to channel page
Videos from the 7th Annual SEA-PHAGES Symposium, held at Janelia Research Campus in Ashburn, Virginia.
Videos
Subchannels
2015 Student Talks (18 videos) Go to channel page
The student talks from the 2015 Symposium.
Videos
Assessment (2 videos) Go to channel page
Videos related to measuring the SEA-PHAGES program's impact on students.
Videos
All Videos
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Assembling Reads with Newbler

A video tutorial about how to use 454's assembly program Newbler (aka GS De Novo Assembler) to assemble bacteriophage genomes that have been sequenced by 454, Illumina, or Ion Torrent technologies.

2:57 Usable file types
5:50 Assembling 454 reads (.sff)
8:37 Assembling Illumina reads (.fastq)
9:47 Newbler results/output
14:07 Ion torrent reads
16:27 Launching consed

Recorded and edited by Dan Russell.

Added: Oct 30, 2015

DNA Master: Database and Documentation: How to Post, Recreate, and Parse

Dr. Welkin Pope describes the underlying structure of a DNA Master file, including the Database and the Documentation. Included are host to Post (save changes to the database), Recreate (save changes to the Documentation), and Parse (populate the Database from the Documentation).

Recorded by and starring Welkin Pope. Edited by Dan Russell.

Added: Oct 27, 2015

DNA Master: How to Validate and Renumber Genes

Welkin clicks you through how to check that all of your genes are valid, as well as how you can renumber genes after adding or deleting genes has disrupted the order.

Recorded by and starring Welkin Pope. Edited by Dan Russell.

Added: Oct 23, 2015

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