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Recent Activity

Claire Rinehart posted in Pham not found in Starterator

ejyoon posted in HHPred not updating in PECAAN

cdshaffer posted in HHPred not updating in PECAAN

ejyoon posted in HHPred not updating in PECAAN

Debbie Jacobs-Sera posted in CS2 Holin Gene

All posts created by ugolebiewska

| posted 05 Apr, 2016 18:24
ugolebiewska avatar
ugolebiewska
Thank you so much Chris !!! Got the report.
Posted in: Starterator → phage that crash starterator
| posted 04 Apr, 2016 22:15
ugolebiewska avatar
ugolebiewska

Thank you Chris ! Yes indeed Tonenili has a wrap around gene.
Urszula.

cdshaffer
Tonenili is a C1 phage, I bet there is a wrap around gene which is causing the crash. I have a version of starterator which tries to recognize this situation and just skip the analysis for that gene. Analysis is running now. I will try running on that version of starterator and see if we can avoid the crash. I will post an update one way or another as soon as I can.
Posted in: Starterator → phage that crash starterator
| posted 04 Apr, 2016 19:02
ugolebiewska avatar
ugolebiewska
Chris,
Here is Urszula from QCC. I tried to run Tonenili. Freshly installed Starterator. It crashed on Pham 126 of 261 (which is Pham 9682). I tried both names Tonenili and Tonenili_Draft with the same result. The error message is ValueError: -1 in not in list.
Best,
Urszula
Posted in: Starterator → phage that crash starterator