SEA-PHAGES Logo

The official website of the HHMI Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science program.

Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

Recent Activity

Viknesh Sivanathan posted in Recording Data for Attempts to Raise Lysogens

mcclory posted in Webbed plate hack for low-titer stocks and small plaques

nic.vega posted in Covaris fragmentation

Tamarah Adair posted in MRA required information

Dan Russell posted in MRA required information

All posts created by ugolebiewska

| posted 05 Apr, 2016 18:24
ugolebiewska avatar
ugolebiewska
Thank you so much Chris !!! Got the report.
Posted in: Starterator → phage that crash starterator
| posted 04 Apr, 2016 22:15
ugolebiewska avatar
ugolebiewska

Thank you Chris ! Yes indeed Tonenili has a wrap around gene.
Urszula.

cdshaffer
Tonenili is a C1 phage, I bet there is a wrap around gene which is causing the crash. I have a version of starterator which tries to recognize this situation and just skip the analysis for that gene. Analysis is running now. I will try running on that version of starterator and see if we can avoid the crash. I will post an update one way or another as soon as I can.
Posted in: Starterator → phage that crash starterator
| posted 04 Apr, 2016 19:02
ugolebiewska avatar
ugolebiewska
Chris,
Here is Urszula from QCC. I tried to run Tonenili. Freshly installed Starterator. It crashed on Pham 126 of 261 (which is Pham 9682). I tried both names Tonenili and Tonenili_Draft with the same result. The error message is ValueError: -1 in not in list.
Best,
Urszula
Posted in: Starterator → phage that crash starterator