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Pham and Phylogenetic analysis software

| posted 23 Mar, 2016 14:15
GregFrederick@letu.edu avatar
GregFrederick@letu.edu
Which softwares are best for producing Pham circles and Phylogenetic trees like those depicted in this reference?

https://www.researchgate.net/figure/250926373_fig13_A-B-Pham-circles-for-phams-3687-A-and-6944-B-Phage-names-are-organized-by

Thanks for your suggestions. Greg
| posted 24 Mar, 2016 17:58
GregFrederick@letu.edu avatar
GregFrederick@letu.edu
I realized I put this in the wrong place… But I also just figured out that phamerator is capable of the Pham circles.

Any thoughts on Phylogenetic trees?
| posted 04 Apr, 2016 18:41
DanRussell avatar
DanRussell
Hi Greg,

Looks like in that paper we mention using ClustalW which has been retired in favor of ClustalOmega to generate the numbers, then NJPlot to draw the trees.

–Dan
 
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