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Pham and Phylogenetic analysis software
| Link to this post | posted 23 Mar, 2016 14:15 | |
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Which softwares are best for producing Pham circles and Phylogenetic trees like those depicted in this reference? https://www.researchgate.net/figure/250926373_fig13_A-B-Pham-circles-for-phams-3687-A-and-6944-B-Phage-names-are-organized-by Thanks for your suggestions. Greg |
| Link to this post | posted 24 Mar, 2016 17:58 | |
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I realized I put this in the wrong place… But I also just figured out that phamerator is capable of the Pham circles. Any thoughts on Phylogenetic trees? |
| Link to this post | posted 04 Apr, 2016 18:41 | |
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Hi Greg, Looks like in that paper we mention using ClustalW which has been retired in favor of ClustalOmega to generate the numbers, then NJPlot to draw the trees. –Dan |