Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.
Recent Activity
cdshaffer posted in Whole phage starterator reports
Debbie Jacobs-Sera posted in frameshifts
uOttawaPHAGE posted in frameshifts
Dan Russell posted in Congrats to Steve Caruso and Beth Wilkes — 2025 ASM Outstanding Instructor Award, Honorable Mention
ACMPhageHunters posted in Clarification Question About HNH Endonuclease Function Determination in view of hits to the Ref Sequences
Difficulty pulling large-scale data for batch GCS analysis using Pope/Mavrich 2017 scripts
| Link to this post | posted 10 May, 2022 18:31 | |
|---|---|
|
Hi Amanda, It seems that the way text is rendered in this forum changes double hyphens to a single wide one. Try 'pip install –upgrade phamclust' with two hyphens rather than just the visible one, and see whether that fixes things. Assuming it does, setting the clustering threshold to 0 should now yield the expected all-vs-all matrix. -Christian |