Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.
Recent Activity
Jeremy Garza posted in Phage Staining - Uranyl Acetate
Debbie Jacobs-Sera posted in Help with Annotating Direct Terminal Repeats
Marie Fogarty posted in Help with Annotating Direct Terminal Repeats
cdshaffer posted in Help with Annotating Direct Terminal Repeats
Marie Fogarty posted in Help with Annotating Direct Terminal Repeats
Difficulty pulling large-scale data for batch GCS analysis using Pope/Mavrich 2017 scripts
| Link to this post | posted 10 May, 2022 18:31 | |
|---|---|
|
Hi Amanda, It seems that the way text is rendered in this forum changes double hyphens to a single wide one. Try 'pip install –upgrade phamclust' with two hyphens rather than just the visible one, and see whether that fixes things. Assuming it does, setting the clustering threshold to 0 should now yield the expected all-vs-all matrix. -Christian |