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non SEA-PHAGES genomes
| Link to this post | posted 17 Apr, 2018 12:56 | |
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Cluster AR contains a phage that was not isolated and sequenced by the SEA-PHAGES program. Its finders annotated the genome differently. We do not curate, update, or QC this genome. This phage is: ArV1 (edited) |
| Link to this post | posted 17 Oct, 2019 22:15 | |
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Hi Welkin - just curious, did you mean phage ArV1 from this paper? I couldn't find a phage called AvR1. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5375659/ Some students are presenting the ArV1 paper for journal club. The AR cluster contractile tail on a Siphoviridae is very interesting…! |
| Link to this post | posted 18 Oct, 2019 01:19 | |
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Hi! Yes, ArV1 is the phage of that paper. Why do you say that AR phages are siphoviridae? debbie |
| Link to this post | posted 18 Oct, 2019 18:24 | |
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Oh, interesting…We adopted DrYang from the Genome Exchange, and its PhagesDB page says it has Siphoviridae morphology (from the EM pic, I can see why - its tail looks somewhat long). But now I see that other AR phages are listed as Myoviridae. Should I update the PhagesDB page for DrYang to list it as having Myoviridae morphology based on the rest of the cluster members? |
| Link to this post | posted 19 Oct, 2019 00:17 | |
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That would be great! debbie |
| Link to this post | posted 31 Oct, 2019 20:28 | |
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Hi Debbie, I can't update DrYang to be a Myoviridae in phagesdb.org because it was not our phage originally, and it is asking me to input the GPS coordinates (which I don't know) as part of the change/update. |
| Link to this post | posted 01 Nov, 2019 01:06 | |
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Done! |