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cdshaffer posted in Clarification Question About HNH Endonuclease Function Determination in view of hits to the Ref Sequences
PECAAN
| Link to this post | posted 25 Jan, 2021 02:44 | |
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We just got assigned a phage to annotate, Dignity. When I went to look for it in PECAAN I could not find it. What can I do to get access it? Does it have to be assigned to our school to access it or something like that? |
| Link to this post | posted 25 Jan, 2021 13:23 | |
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Hi Steve, https://seaphages.org/forums/topic/224/ This link will take you to PECAAN‘s user guide. It provides directions for you to add your phage to PECAAN. Thanks, debbie |
| Link to this post | posted 24 Nov, 2025 23:46 | |
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Hi I was going over my annotations in PECAAN and I noticed that the starterator link is broken. In the past I used NKF for proteins of unknown function but the red cross doesnt turn to a green checkmark anymore for NKF. It does recognize hypothetical protein. Is that the preferable nomenclature? thank you Fernando |
| Link to this post | posted 24 Nov, 2025 23:46 | |
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Hi I was going over my annotations in PECAAN and I noticed that the starterator link is broken. In the past I used NKF for proteins of unknown function but the red cross doesnt turn to a green checkmark anymore for NKF. It does recognize hypothetical protein. Is that the preferable nomenclature? thank you Fernando |
| Link to this post | posted 26 Nov, 2025 14:03 | |
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Hi Fernando, You are correct. Please use hypothetical protein in place of NKF. Best, Denise |
| Link to this post | posted 29 Nov, 2025 01:51 | |
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Broken links to starterator reports are usually issues with starterator not PECAAN so you might want to cross post the message to the starterator topic as well. I just checked a dozen or so starterator links on PECAAN for the phage we are working on and they are all working so this may be a sporadic problem. Can you check again, if links are still broken, post the phage and gene (by location) that is specifically broken. Also as a reminder, if you have a phage that was sequenced in 2025 there should also be a whole phage report available for your phage. You can get to the report by going here: https://wustl.box.com/v/Actino-phage phage are sorted by phage name into one of the folders you find there. |