Welcome to the forums at seaphages.org. Please feel free to ask any questions related to the SEA-PHAGES program. Any logged-in user may post new topics and reply to existing topics. If you'd like to see a new forum created, please contact us using our form or email us at info@seaphages.org.

Recent Activity

codon usage preference software

Link to this post \| posted yesterday, 18:12
adiaz	Greetings, Students in our bioinformatics course are working on individual projects and one of the pairs are trying to determine codon usage preference between the host bacteria and some phages that encode for 16-20 tRNAs. We tried to using COUSIN (COdon Usage Similarity INdex) but that is not working as we get an error message for the output. Does anyone know of other programs that can determine codon usage preference that do not require coding knowledge? Thank you, Arturo

Link to this post | posted yesterday, 18:12

adiaz

Greetings,

Students in our bioinformatics course are working on individual projects and one of the pairs are trying to determine codon usage preference between the host bacteria and some phages that encode for 16-20 tRNAs. We tried to using COUSIN (COdon Usage Similarity INdex) but that is not working as we get an error message for the output. Does anyone know of other programs that can determine codon usage preference that do not require coding knowledge?

Thank you,

Arturo